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An integrative approach to reveal driver gene fusions from paired-end sequencing data in cancer.
Wang XS, Prensner JR, Chen G, Cao Q, Han B, Dhanasekaran SM, Ponnala R, Cao X, Varambally S, Thomas DG, Giordano TJ, Beer DG, Palanisamy N, Sartor MA, Omenn GS, Chinnaiyan AM. Wang XS, et al. Among authors: omenn gs. Nat Biotechnol. 2009 Nov;27(11):1005-11. doi: 10.1038/nbt.1584. Epub 2009 Nov 1. Nat Biotechnol. 2009. PMID: 19881495 Free PMC article.
ConceptGen: a gene set enrichment and gene set relation mapping tool.
Sartor MA, Mahavisno V, Keshamouni VG, Cavalcoli J, Wright Z, Karnovsky A, Kuick R, Jagadish HV, Mirel B, Weymouth T, Athey B, Omenn GS. Sartor MA, et al. Among authors: omenn gs. Bioinformatics. 2010 Feb 15;26(4):456-63. doi: 10.1093/bioinformatics/btp683. Epub 2009 Dec 9. Bioinformatics. 2010. PMID: 20007254 Free PMC article.
The NIH National Center for Integrative Biomedical Informatics (NCIBI).
Athey BD, Cavalcoli JD, Jagadish HV, Omenn GS, Mirel B, Kretzler M, Burant C, Isokpehi RD, DeLisi C; NCIBI faculty, trainees, and staff. Athey BD, et al. Among authors: omenn gs. J Am Med Inform Assoc. 2012 Mar-Apr;19(2):166-70. doi: 10.1136/amiajnl-2011-000552. Epub 2011 Nov 19. J Am Med Inform Assoc. 2012. PMID: 22101971 Free PMC article.
Metab2MeSH: annotating compounds with medical subject headings.
Sartor MA, Ade A, Wright Z, States D, Omenn GS, Athey B, Karnovsky A. Sartor MA, et al. Among authors: omenn gs. Bioinformatics. 2012 May 15;28(10):1408-10. doi: 10.1093/bioinformatics/bts156. Epub 2012 Apr 6. Bioinformatics. 2012. PMID: 22492643 Free PMC article.
HIV infection reveals widespread expansion of novel centromeric human endogenous retroviruses.
Contreras-Galindo R, Kaplan MH, He S, Contreras-Galindo AC, Gonzalez-Hernandez MJ, Kappes F, Dube D, Chan SM, Robinson D, Meng F, Dai M, Gitlin SD, Chinnaiyan AM, Omenn GS, Markovitz DM. Contreras-Galindo R, et al. Among authors: omenn gs. Genome Res. 2013 Sep;23(9):1505-13. doi: 10.1101/gr.144303.112. Epub 2013 May 8. Genome Res. 2013. PMID: 23657884 Free PMC article.
477 results