Ohler U - Search Results

1

Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection.

Yardımcı GG, Frank CL, Crawford GE, Ohler U. Yardımcı GG, et al. Among authors: ohler u. Nucleic Acids Res. 2014 Oct 29;42(19):11865-78. doi: 10.1093/nar/gku810. Epub 2014 Oct 7. Nucleic Acids Res. 2014. PMID: 25294828 Free PMC article.

2

Stress-induced nuclear speckle reorganization is linked to activation of immediate early gene splicing.

Sung HM, Schott J, Boss P, Lehmann JA, Hardt MR, Lindner D, Messens J, Bogeski I, Ohler U, Stoecklin G. Sung HM, et al. Among authors: ohler u. J Cell Biol. 2023 Dec 4;222(12):e202111151. doi: 10.1083/jcb.202111151. Epub 2023 Nov 13. J Cell Biol. 2023. PMID: 37956386 Free PMC article.

3

Informative priors based on transcription factor structural class improve de novo motif discovery.

Narlikar L, Gordân R, Ohler U, Hartemink AJ. Narlikar L, et al. Among authors: ohler u. Bioinformatics. 2006 Jul 15;22(14):e384-92. doi: 10.1093/bioinformatics/btl251. Bioinformatics. 2006. PMID: 16873497

4

Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction.

Ohler U. Ohler U. Nucleic Acids Res. 2006;34(20):5943-50. doi: 10.1093/nar/gkl608. Epub 2006 Oct 26. Nucleic Acids Res. 2006. PMID: 17068082 Free PMC article.

5

Measuring spatial preferences at fine-scale resolution identifies known and novel cis-regulatory element candidates and functional motif-pair relationships.

Yokoyama KD, Ohler U, Wray GA. Yokoyama KD, et al. Among authors: ohler u. Nucleic Acids Res. 2009 Jul;37(13):e92. doi: 10.1093/nar/gkp423. Epub 2009 May 29. Nucleic Acids Res. 2009. PMID: 19483094 Free PMC article.

6

The viral and cellular microRNA targetome in lymphoblastoid cell lines.

Skalsky RL, Corcoran DL, Gottwein E, Frank CL, Kang D, Hafner M, Nusbaum JD, Feederle R, Delecluse HJ, Luftig MA, Tuschl T, Ohler U, Cullen BR. Skalsky RL, et al. Among authors: ohler u. PLoS Pathog. 2012 Jan;8(1):e1002484. doi: 10.1371/journal.ppat.1002484. Epub 2012 Jan 26. PLoS Pathog. 2012. PMID: 22291592 Free PMC article.

7

Predicting cell-type-specific gene expression from regions of open chromatin.

Natarajan A, Yardimci GG, Sheffield NC, Crawford GE, Ohler U. Natarajan A, et al. Among authors: ohler u. Genome Res. 2012 Sep;22(9):1711-22. doi: 10.1101/gr.135129.111. Genome Res. 2012. PMID: 22955983 Free PMC article.

8

Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity.

Tewari AK, Yardimci GG, Shibata Y, Sheffield NC, Song L, Taylor BS, Georgiev SG, Coetzee GA, Ohler U, Furey TS, Crawford GE, Febbo PG. Tewari AK, et al. Among authors: ohler u. Genome Biol. 2012 Oct 3;13(10):R88. doi: 10.1186/gb-2012-13-10-r88. Genome Biol. 2012. PMID: 23034120 Free PMC article.

9

COUGER--co-factors associated with uniquely-bound genomic regions.

Munteanu A, Ohler U, Gordân R. Munteanu A, et al. Among authors: ohler u. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W461-7. doi: 10.1093/nar/gku435. Epub 2014 May 26. Nucleic Acids Res. 2014. PMID: 24861628 Free PMC article.

10

Transcriptional control of tissue formation throughout root development.

Moreno-Risueno MA, Sozzani R, Yardımcı GG, Petricka JJ, Vernoux T, Blilou I, Alonso J, Winter CM, Ohler U, Scheres B, Benfey PN. Moreno-Risueno MA, et al. Among authors: ohler u. Science. 2015 Oct 23;350(6259):426-30. doi: 10.1126/science.aad1171. Science. 2015. PMID: 26494755 Free PMC article.

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