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Short-read, high-throughput sequencing technology for STR genotyping.
Bornman DM, Hester ME, Schuetter JM, Kasoji MD, Minard-Smith A, Barden CA, Nelson SC, Godbold GD, Baker CH, Yang B, Walther JE, Tornes IE, Yan PS, Rodriguez B, Bundschuh R, Dickens ML, Young BA, Faith SA. Bornman DM, et al. Among authors: bundschuh r. Biotech Rapid Dispatches. 2012 Apr;2012:1-6. Biotech Rapid Dispatches. 2012. PMID: 25621315 Free PMC article.
A Scalable, Flexible Workflow for MethylCap-Seq Data Analysis.
Rodriguez B, Tam HH, Frankhouser D, Trimarchi M, Murphy M, Kuo C, Parikh D, Ball B, Schwind S, Curfman J, Blum W, Marcucci G, Yan P, Bundschuh R. Rodriguez B, et al. Among authors: bundschuh r. IEEE Int Workshop Genomic Signal Process Stat. 2011:1-4. doi: 10.1109/GENSiPS.2011.6169426. IEEE Int Workshop Genomic Signal Process Stat. 2011. PMID: 22484542 Free PMC article.
Genome-wide methylation profiling in decitabine-treated patients with acute myeloid leukemia.
Yan P, Frankhouser D, Murphy M, Tam HH, Rodriguez B, Curfman J, Trimarchi M, Geyer S, Wu YZ, Whitman SP, Metzeler K, Walker A, Klisovic R, Jacob S, Grever MR, Byrd JC, Bloomfield CD, Garzon R, Blum W, Caligiuri MA, Bundschuh R, Marcucci G. Yan P, et al. Among authors: bundschuh r. Blood. 2012 Sep 20;120(12):2466-74. doi: 10.1182/blood-2012-05-429175. Epub 2012 Jul 11. Blood. 2012. PMID: 22786882 Free PMC article.
Methods for high-throughput MethylCap-Seq data analysis.
Rodriguez BA, Frankhouser D, Murphy M, Trimarchi M, Tam HH, Curfman J, Huang R, Chan MW, Lai HC, Parikh D, Ball B, Schwind S, Blum W, Marcucci G, Yan P, Bundschuh R. Rodriguez BA, et al. Among authors: bundschuh r. BMC Genomics. 2012;13 Suppl 6(Suppl 6):S14. doi: 10.1186/1471-2164-13-S6-S14. Epub 2012 Oct 26. BMC Genomics. 2012. PMID: 23134780 Free PMC article.
Enrichment-based DNA methylation analysis using next-generation sequencing: sample exclusion, estimating changes in global methylation, and the contribution of replicate lanes.
Trimarchi MP, Murphy M, Frankhouser D, Rodriguez BA, Curfman J, Marcucci G, Yan P, Bundschuh R. Trimarchi MP, et al. Among authors: bundschuh r. BMC Genomics. 2012;13 Suppl 8(Suppl 8):S6. doi: 10.1186/1471-2164-13-S8-S6. Epub 2012 Dec 17. BMC Genomics. 2012. PMID: 23281662 Free PMC article.
PrEMeR-CG: inferring nucleotide level DNA methylation values from MethylCap-seq data.
Frankhouser DE, Murphy M, Blachly JS, Park J, Zoller MW, Ganbat JO, Curfman J, Byrd JC, Lin S, Marcucci G, Yan P, Bundschuh R. Frankhouser DE, et al. Among authors: bundschuh r. Bioinformatics. 2014 Dec 15;30(24):3567-74. doi: 10.1093/bioinformatics/btu583. Epub 2014 Aug 31. Bioinformatics. 2014. PMID: 25178460 Free PMC article.
Quality Control for RNA-Seq (QuaCRS): An Integrated Quality Control Pipeline.
Kroll KW, Mokaram NE, Pelletier AR, Frankhouser DE, Westphal MS, Stump PA, Stump CL, Bundschuh R, Blachly JS, Yan P. Kroll KW, et al. Among authors: bundschuh r. Cancer Inform. 2014 Oct 15;13(Suppl 3):7-14. doi: 10.4137/CIN.S14022. eCollection 2014. Cancer Inform. 2014. PMID: 25368506 Free PMC article.
261 results