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Quality scores for 32,000 genomes.
Stand Genomic Sci. 2014 Dec 8;9:20. doi: 10.1186/1944-3277-9-20. eCollection 2014.
Stand Genomic Sci. 2014.
PMID: 25780509
Free PMC article.
Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam.
Chai J, Kora G, Ahn TH, Hyatt D, Pan C.
Chai J, et al.
BMC Evol Biol. 2014 Oct 9;14:207. doi: 10.1186/s12862-014-0207-y.
BMC Evol Biol. 2014.
PMID: 25293379
Free PMC article.
Item in Clipboard
Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes.
Karpinets TV, Obraztsova AY, Wang Y, Schmoyer DD, Kora GH, Park BH, Serres MH, Romine MF, Land ML, Kothe TB, Fredrickson JK, Nealson KH, Uberbacher EC.
Karpinets TV, et al. Among authors: kora gh.
Funct Integr Genomics. 2010 Mar;10(1):97-110. doi: 10.1007/s10142-009-0142-y. Epub 2009 Oct 3.
Funct Integr Genomics. 2010.
PMID: 19802638
Free PMC article.
Item in Clipboard
Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions.
Karpinets TV, Romine MF, Schmoyer DD, Kora GH, Syed MH, Leuze MR, Serres MH, Park BH, Samatova NF, Uberbacher EC.
Karpinets TV, et al. Among authors: kora gh.
Database (Oxford). 2010 Jul 6;2010:baq012. doi: 10.1093/database/baq012.
Database (Oxford). 2010.
PMID: 20627862
Free PMC article.
Item in Clipboard
MIDAS: a database-searching algorithm for metabolite identification in metabolomics.
Wang Y, Kora G, Bowen BP, Pan C.
Wang Y, et al.
Anal Chem. 2014 Oct 7;86(19):9496-503. doi: 10.1021/ac5014783. Epub 2014 Sep 11.
Anal Chem. 2014.
PMID: 25157598
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Shewregdb: database and visualization environment for experimental and predicted regulatory information in Shewanella oneidensis mr-1.
Syed MH, Karpinets TV, Leuze MR, Kora GH, Romine MR, Uberbacher EC.
Syed MH, et al. Among authors: kora gh.
Bioinformation. 2009 Oct 15;4(4):169-72. doi: 10.6026/97320630004169.
Bioinformation. 2009.
PMID: 20198195
Free PMC article.
Item in Clipboard
Robust estimation of peptide abundance ratios and rigorous scoring of their variability and bias in quantitative shotgun proteomics.
Pan C, Kora G, Tabb DL, Pelletier DA, McDonald WH, Hurst GB, Hettich RL, Samatova NF.
Pan C, et al.
Anal Chem. 2006 Oct 15;78(20):7110-20. doi: 10.1021/ac0606554.
Anal Chem. 2006.
PMID: 17037910
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ProRata: A quantitative proteomics program for accurate protein abundance ratio estimation with confidence interval evaluation.
Pan C, Kora G, McDonald WH, Tabb DL, VerBerkmoes NC, Hurst GB, Pelletier DA, Samatova NF, Hettich RL.
Pan C, et al.
Anal Chem. 2006 Oct 15;78(20):7121-31. doi: 10.1021/ac060654b.
Anal Chem. 2006.
PMID: 17037911
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