Nelson KE - Search Results

1

Meta-omics uncover temporal regulation of pathways across oral microbiome genera during in vitro sugar metabolism.

Edlund A, Yang Y, Yooseph S, Hall AP, Nguyen DD, Dorrestein PC, Nelson KE, He X, Lux R, Shi W, McLean JS. Edlund A, et al. Among authors: nelson ke. ISME J. 2015 Dec;9(12):2605-19. doi: 10.1038/ismej.2015.72. Epub 2015 May 29. ISME J. 2015. PMID: 26023872 Free PMC article.

2

Bacterial diversity in the oral cavity of 10 healthy individuals.

Bik EM, Long CD, Armitage GC, Loomer P, Emerson J, Mongodin EF, Nelson KE, Gill SR, Fraser-Liggett CM, Relman DA. Bik EM, et al. Among authors: nelson ke. ISME J. 2010 Aug;4(8):962-74. doi: 10.1038/ismej.2010.30. Epub 2010 Mar 25. ISME J. 2010. PMID: 20336157 Free PMC article.

3

Microbiome analysis of stool samples from African Americans with colon polyps.

Brim H, Yooseph S, Zoetendal EG, Lee E, Torralbo M, Laiyemo AO, Shokrani B, Nelson K, Ashktorab H. Brim H, et al. PLoS One. 2013 Dec 20;8(12):e81352. doi: 10.1371/journal.pone.0081352. eCollection 2013. PLoS One. 2013. PMID: 24376500 Free PMC article.

4

An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome.

Edlund A, Yang Y, Hall AP, Guo L, Lux R, He X, Nelson KE, Nealson KH, Yooseph S, Shi W, McLean JS. Edlund A, et al. Among authors: nelson ke. Microbiome. 2013 Oct 2;1(1):25. doi: 10.1186/2049-2618-1-25. Microbiome. 2013. PMID: 24451062 Free PMC article.

5

Human papillomavirus community in healthy persons, defined by metagenomics analysis of human microbiome project shotgun sequencing data sets.

Ma Y, Madupu R, Karaoz U, Nossa CW, Yang L, Yooseph S, Yachimski PS, Brodie EL, Nelson KE, Pei Z. Ma Y, et al. Among authors: nelson ke. J Virol. 2014 May;88(9):4786-97. doi: 10.1128/JVI.00093-14. Epub 2014 Feb 12. J Virol. 2014. PMID: 24522917 Free PMC article.

6

Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle.

He X, McLean JS, Edlund A, Yooseph S, Hall AP, Liu SY, Dorrestein PC, Esquenazi E, Hunter RC, Cheng G, Nelson KE, Lux R, Shi W. He X, et al. Among authors: nelson ke. Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):244-9. doi: 10.1073/pnas.1419038112. Epub 2014 Dec 22. Proc Natl Acad Sci U S A. 2015. PMID: 25535390 Free PMC article.

7

Stool microbiota composition is associated with the prospective risk of Plasmodium falciparum infection.

Yooseph S, Kirkness EF, Tran TM, Harkins DM, Jones MB, Torralba MG, O'Connell E, Nutman TB, Doumbo S, Doumbo OK, Traore B, Crompton PD, Nelson KE. Yooseph S, et al. Among authors: nelson ke. BMC Genomics. 2015 Aug 22;16(1):631. doi: 10.1186/s12864-015-1819-3. BMC Genomics. 2015. PMID: 26296559 Free PMC article.

8

Temporal variation selects for diet-microbe co-metabolic traits in the gut of Gorilla spp.

Gomez A, Rothman JM, Petrzelkova K, Yeoman CJ, Vlckova K, Umaña JD, Carr M, Modry D, Todd A, Torralba M, Nelson KE, Stumpf RM, Wilson BA, Blekhman R, White BA, Leigh SR. Gomez A, et al. Among authors: nelson ke. ISME J. 2016 Feb;10(2):514-26. doi: 10.1038/ismej.2015.146. Epub 2015 Aug 28. ISME J. 2016. PMID: 26315972 Free PMC article.

9

An Update on the Status of Current Research on the Mammalian Microbiome.

Nelson KE. Nelson KE. ILAR J. 2015;56(2):163-8. doi: 10.1093/ilar/ilv033. ILAR J. 2015. PMID: 26323626 Review.

10

Library preparation methodology can influence genomic and functional predictions in human microbiome research.

Jones MB, Highlander SK, Anderson EL, Li W, Dayrit M, Klitgord N, Fabani MM, Seguritan V, Green J, Pride DT, Yooseph S, Biggs W, Nelson KE, Venter JC. Jones MB, et al. Among authors: nelson ke. Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):14024-9. doi: 10.1073/pnas.1519288112. Epub 2015 Oct 28. Proc Natl Acad Sci U S A. 2015. PMID: 26512100 Free PMC article.

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