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Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development.
PLoS Genet. 2015 Aug 19;11(8):e1005428. doi: 10.1371/journal.pgen.1005428. eCollection 2015 Aug.
PLoS Genet. 2015.
PMID: 26288249
Free PMC article.
pathVar: a new method for pathway-based interpretation of gene expression variability.
de Torrente L, Zimmerman S, Taylor D, Hasegawa Y, Wells CA, Mar JC.
de Torrente L, et al.
PeerJ. 2017 May 23;5:e3334. doi: 10.7717/peerj.3334. eCollection 2017.
PeerJ. 2017.
PMID: 28560097
Free PMC article.
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A comparison of survival analysis methods for cancer gene expression RNA-Sequencing data.
Raman P, Zimmerman S, Rathi KS, de Torrenté L, Sarmady M, Wu C, Leipzig J, Taylor DM, Tozeren A, Mar JC.
Raman P, et al. Among authors: de torrente l.
Cancer Genet. 2019 Jun;235-236:1-12. doi: 10.1016/j.cancergen.2019.04.004. Epub 2019 Apr 12.
Cancer Genet. 2019.
PMID: 31296308
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The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data.
de Torrenté L, Zimmerman S, Suzuki M, Christopeit M, Greally JM, Mar JC.
de Torrenté L, et al.
BMC Bioinformatics. 2020 Dec 28;21(Suppl 21):562. doi: 10.1186/s12859-020-03892-w.
BMC Bioinformatics. 2020.
PMID: 33371881
Free PMC article.
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