Cortes-Ciriano I - Search Results

1

Chemically Aware Model Builder (camb): an R package for property and bioactivity modelling of small molecules.

Murrell DS, Cortes-Ciriano I, van Westen GJP, Stott IP, Bender A, Malliavin TE, Glen RC. Murrell DS, et al. J Cheminform. 2015 Aug 28;7:45. doi: 10.1186/s13321-015-0086-2. eCollection 2015. J Cheminform. 2015. PMID: 26322135 Free PMC article.

2

Genomic Patterns of Malignant Peripheral Nerve Sheath Tumor (MPNST) Evolution Correlate with Clinical Outcome and Are Detectable in Cell-Free DNA.

Cortes-Ciriano I, Steele CD, Piculell K, Al-Ibraheemi A, Eulo V, Bui MM, Chatzipli A, Dickson BC, Borcherding DC, Feber A, Galor A, Hart J, Jones KB, Jordan JT, Kim RH, Lindsay D, Miller C, Nishida Y, Proszek PZ, Serrano J, Sundby RT, Szymanski JJ, Ullrich NJ, Viskochil D, Wang X, Snuderl M, Park PJ, Flanagan AM, Hirbe AC, Pillay N, Miller DT; Genomics of MPNST (GeM) Consortium. Cortes-Ciriano I, et al. Cancer Discov. 2023 Mar 1;13(3):654-671. doi: 10.1158/2159-8290.CD-22-0786. Cancer Discov. 2023. PMID: 36598417 Free PMC article.

3

Profilin 1 deficiency drives mitotic defects and reduces genome stability.

Scotto di Carlo F, Russo S, Muyas F, Mangini M, Garribba L, Pazzaglia L, Genesio R, Biamonte F, De Luca AC, Santaguida S, Scotlandi K, Cortés-Ciriano I, Gianfrancesco F. Scotto di Carlo F, et al. Commun Biol. 2023 Jan 4;6(1):9. doi: 10.1038/s42003-022-04392-8. Commun Biol. 2023. PMID: 36599901 Free PMC article.

4

Benchmarking of protein descriptor sets in proteochemometric modeling (part 2): modeling performance of 13 amino acid descriptor sets.

van Westen GJ, Swier RF, Cortes-Ciriano I, Wegner JK, Overington JP, Ijzerman AP, van Vlijmen HW, Bender A. van Westen GJ, et al. J Cheminform. 2013 Sep 24;5(1):42. doi: 10.1186/1758-2946-5-42. J Cheminform. 2013. PMID: 24059743 Free PMC article.

5

Proteochemometric modeling in a Bayesian framework.

Cortes-Ciriano I, van Westen GJ, Lenselink EB, Murrell DS, Bender A, Malliavin T. Cortes-Ciriano I, et al. J Cheminform. 2014 Jun 28;6:35. doi: 10.1186/1758-2946-6-35. eCollection 2014. J Cheminform. 2014. PMID: 25045403 Free PMC article.

6

Extending in silico mechanism-of-action analysis by annotating targets with pathways: application to cellular cytotoxicity readouts.

Liggi S, Drakakis G, Koutsoukas A, Cortes-Ciriano I, Martínez-Alonso P, Malliavin TE, Velazquez-Campoy A, Brewerton SC, Bodkin MJ, Evans DA, Glen RC, Carrodeguas JA, Bender A. Liggi S, et al. Future Med Chem. 2014;6(18):2029-56. doi: 10.4155/fmc.14.137. Future Med Chem. 2014. PMID: 25531967

7

Prediction of the potency of mammalian cyclooxygenase inhibitors with ensemble proteochemometric modeling.

Cortes-Ciriano I, Murrell DS, van Westen GJ, Bender A, Malliavin TE. Cortes-Ciriano I, et al. J Cheminform. 2015 Jan 16;7:1. doi: 10.1186/s13321-014-0049-z. eCollection 2015. J Cheminform. 2015. PMID: 25705261 Free PMC article.

8

Identification of binding sites and favorable ligand binding moieties by virtual screening and self-organizing map analysis.

Harigua-Souiai E, Cortes-Ciriano I, Desdouits N, Malliavin TE, Guizani I, Nilges M, Blondel A, Bouvier G. Harigua-Souiai E, et al. BMC Bioinformatics. 2015 Mar 21;16:93. doi: 10.1186/s12859-015-0518-z. BMC Bioinformatics. 2015. PMID: 25888251 Free PMC article.

9

Proteochemometric modelling coupled to in silico target prediction: an integrated approach for the simultaneous prediction of polypharmacology and binding affinity/potency of small molecules.

Paricharak S, Cortés-Ciriano I, IJzerman AP, Malliavin TE, Bender A. Paricharak S, et al. J Cheminform. 2015 Apr 15;7:15. doi: 10.1186/s13321-015-0063-9. eCollection 2015. J Cheminform. 2015. PMID: 25926892 Free PMC article.

10

Comparing the Influence of Simulated Experimental Errors on 12 Machine Learning Algorithms in Bioactivity Modeling Using 12 Diverse Data Sets.

Cortes-Ciriano I, Bender A, Malliavin TE. Cortes-Ciriano I, et al. J Chem Inf Model. 2015 Jul 27;55(7):1413-25. doi: 10.1021/acs.jcim.5b00101. Epub 2015 Jun 18. J Chem Inf Model. 2015. PMID: 26038978

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