Vizcaíno JA - Search Results

1

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets.

Perez-Riverol Y, Xu QW, Wang R, Uszkoreit J, Griss J, Sanchez A, Reisinger F, Csordas A, Ternent T, Del-Toro N, Dianes JA, Eisenacher M, Hermjakob H, Vizcaíno JA. Perez-Riverol Y, et al. Among authors: vizcaino ja. Mol Cell Proteomics. 2016 Jan;15(1):305-17. doi: 10.1074/mcp.O115.050229. Epub 2015 Nov 6. Mol Cell Proteomics. 2016. PMID: 26545397 Free PMC article.

2

The PSI formal document process and its implementation on the PSI website.

Vizcaíno JA, Martens L, Hermjakob H, Julian RK, Paton NW. Vizcaíno JA, et al. Proteomics. 2007 Jul;7(14):2355-7. doi: 10.1002/pmic.200700064. Proteomics. 2007. PMID: 17570517

3

High Performance Proteomics: 7th HUPO Brain Proteome Project Workshop March 7-9, 2007 Wellcome Trust Conference Centre, Hinxton, UK.

Hamacher M, Stephan C, Eisenacher M, Lewczuk P, Wiltfang J, Martens L, Vizcaíno JA, Kwon KH, Yoo JS, Park YM, Beckers J, Horsch M, de Angelis MH, Cho ZH, Apweiler R, Meyer HE. Hamacher M, et al. Among authors: vizcaino ja. Proteomics. 2007 Aug;7(15):2490-6. doi: 10.1002/pmic.200700449. Proteomics. 2007. PMID: 17610211

4

Analyzing large-scale proteomics projects with latent semantic indexing.

Klie S, Martens L, Vizcaíno JA, Côté R, Jones P, Apweiler R, Hinneburg A, Hermjakob H. Klie S, et al. Among authors: vizcaino ja. J Proteome Res. 2008 Jan;7(1):182-91. doi: 10.1021/pr070461k. Epub 2007 Nov 30. J Proteome Res. 2008. PMID: 18047271

5

Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets.

Mueller M, Vizcaíno JA, Jones P, Côté R, Thorneycroft D, Apweiler R, Hermjakob H, Martens L. Mueller M, et al. Among authors: vizcaino ja. Proteomics. 2008 Mar;8(6):1138-48. doi: 10.1002/pmic.200700761. Proteomics. 2008. PMID: 18283668

6

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics.

Bell AW, Deutsch EW, Au CE, Kearney RE, Beavis R, Sechi S, Nilsson T, Bergeron JJ; HUPO Test Sample Working Group. Bell AW, et al. Nat Methods. 2009 Jun;6(6):423-30. doi: 10.1038/nmeth.1333. Nat Methods. 2009. PMID: 19448641 Free PMC article.

7

A guide to the Proteomics Identifications Database proteomics data repository.

Vizcaíno JA, Côté R, Reisinger F, Foster JM, Mueller M, Rameseder J, Hermjakob H, Martens L. Vizcaíno JA, et al. Proteomics. 2009 Sep;9(18):4276-83. doi: 10.1002/pmic.200900402. Proteomics. 2009. PMID: 19662629 Free PMC article.

8

The Proteomics Identifications database: 2010 update.

Vizcaíno JA, Côté R, Reisinger F, Barsnes H, Foster JM, Rameseder J, Hermjakob H, Martens L. Vizcaíno JA, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D736-42. doi: 10.1093/nar/gkp964. Epub 2009 Nov 11. Nucleic Acids Res. 2010. PMID: 19906717 Free PMC article.

9

PRIDE: Data submission and analysis.

Vizcaíno JA, Reisinger F, Côté R, Martens L. Vizcaíno JA, et al. Curr Protoc Protein Sci. 2010 Apr;Chapter 25:25.4.1-25.4.11. doi: 10.1002/0471140864.ps2504s60. Curr Protoc Protein Sci. 2010. PMID: 20393974

10

The Ontology Lookup Service: bigger and better.

Côté R, Reisinger F, Martens L, Barsnes H, Vizcaino JA, Hermjakob H. Côté R, et al. Among authors: vizcaino ja. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W155-60. doi: 10.1093/nar/gkq331. Epub 2010 May 11. Nucleic Acids Res. 2010. PMID: 20460452 Free PMC article.

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