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Spiked proteomic standard dataset for testing label-free quantitative software and statistical methods.
Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A. Ramus C, et al. Among authors: garin j. Data Brief. 2015 Dec 17;6:286-94. doi: 10.1016/j.dib.2015.11.063. eCollection 2016 Mar. Data Brief. 2015. PMID: 26862574 Free PMC article.
Benchmarking quantitative label-free LC-MS data processing workflows using a complex spiked proteomic standard dataset.
Ramus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E, Bouyssié D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J, Cianférani S, Ferro M, Van Dorssaeler A, Burlet-Schiltz O, Schaeffer C, Couté Y, Gonzalez de Peredo A. Ramus C, et al. Among authors: garin j. J Proteomics. 2016 Jan 30;132:51-62. doi: 10.1016/j.jprot.2015.11.011. Epub 2015 Nov 14. J Proteomics. 2016. PMID: 26585461
Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.
Carapito C, Lane L, Benama M, Opsomer A, Mouton-Barbosa E, Garrigues L, Gonzalez de Peredo A, Burel A, Bruley C, Gateau A, Bouyssié D, Jaquinod M, Cianferani S, Burlet-Schiltz O, Van Dorsselaer A, Garin J, Vandenbrouck Y. Carapito C, et al. Among authors: garin j. J Proteome Res. 2015 Sep 4;14(9):3621-34. doi: 10.1021/pr5010345. Epub 2015 Jul 22. J Proteome Res. 2015. PMID: 26132440
Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update.
Vandenbrouck Y, Lane L, Carapito C, Duek P, Rondel K, Bruley C, Macron C, Gonzalez de Peredo A, Couté Y, Chaoui K, Com E, Gateau A, Hesse AM, Marcellin M, Méar L, Mouton-Barbosa E, Robin T, Burlet-Schiltz O, Cianferani S, Ferro M, Fréour T, Lindskog C, Garin J, Pineau C. Vandenbrouck Y, et al. Among authors: garin j. J Proteome Res. 2016 Nov 4;15(11):3998-4019. doi: 10.1021/acs.jproteome.6b00400. Epub 2016 Aug 23. J Proteome Res. 2016. PMID: 27444420 Free article.
Proline: an efficient and user-friendly software suite for large-scale proteomics.
Bouyssié D, Hesse AM, Mouton-Barbosa E, Rompais M, Macron C, Carapito C, Gonzalez de Peredo A, Couté Y, Dupierris V, Burel A, Menetrey JP, Kalaitzakis A, Poisat J, Romdhani A, Burlet-Schiltz O, Cianférani S, Garin J, Bruley C. Bouyssié D, et al. Among authors: garin j. Bioinformatics. 2020 May 1;36(10):3148-3155. doi: 10.1093/bioinformatics/btaa118. Bioinformatics. 2020. PMID: 32096818 Free PMC article.
An optimized strategy for ICAT quantification of membrane proteins.
Ramus C, Gonzalez de Peredo A, Dahout C, Gallagher M, Garin J. Ramus C, et al. Among authors: garin j. Mol Cell Proteomics. 2006 Jan;5(1):68-78. doi: 10.1074/mcp.M500205-MCP200. Epub 2005 Oct 10. Mol Cell Proteomics. 2006. PMID: 16216825 Free article.
415 results