Hatzimanikatis V - Search Results

1

Model-Driven Understanding of Palmitoylation Dynamics: Regulated Acylation of the Endoplasmic Reticulum Chaperone Calnexin.

Dallavilla T, Abrami L, Sandoz PA, Savoglidis G, Hatzimanikatis V, van der Goot FG. Dallavilla T, et al. Among authors: hatzimanikatis v. PLoS Comput Biol. 2016 Feb 22;12(2):e1004774. doi: 10.1371/journal.pcbi.1004774. eCollection 2016 Feb. PLoS Comput Biol. 2016. PMID: 26900856 Free PMC article.

2

A method for analysis and design of metabolism using metabolomics data and kinetic models: Application on lipidomics using a novel kinetic model of sphingolipid metabolism.

Savoglidis G, da Silveira Dos Santos AX, Riezman I, Angelino P, Riezman H, Hatzimanikatis V. Savoglidis G, et al. Among authors: hatzimanikatis v. Metab Eng. 2016 Sep;37:46-62. doi: 10.1016/j.ymben.2016.04.002. Epub 2016 Apr 23. Metab Eng. 2016. PMID: 27113440 Free article.

3

Identification and dynamics of the human ZDHHC16-ZDHHC6 palmitoylation cascade.

Abrami L, Dallavilla T, Sandoz PA, Demir M, Kunz B, Savoglidis G, Hatzimanikatis V, van der Goot FG. Abrami L, et al. Among authors: hatzimanikatis v. Elife. 2017 Aug 15;6:e27826. doi: 10.7554/eLife.27826. Elife. 2017. PMID: 28826475 Free PMC article.

4

Efficient cleavage of aryl ether C-O linkages by Rh-Ni and Ru-Ni nanoscale catalysts operating in water.

Bulut S, Siankevich S, van Muyden AP, Alexander DTL, Savoglidis G, Zhang J, Hatzimanikatis V, Yan N, Dyson PJ. Bulut S, et al. Among authors: hatzimanikatis v. Chem Sci. 2018 Jun 6;9(25):5530-5535. doi: 10.1039/c8sc00742j. eCollection 2018 Jul 7. Chem Sci. 2018. PMID: 30061984 Free PMC article.

5

Dynamic Radiolabeling of S-Palmitoylated Proteins.

Abrami L, Denhardt-Eriksson RA, Hatzimanikatis V, van der Goot FG. Abrami L, et al. Among authors: hatzimanikatis v. Methods Mol Biol. 2019;2009:111-127. doi: 10.1007/978-1-4939-9532-5_9. Methods Mol Biol. 2019. PMID: 31152399

6

Statistical inference in ensemble modeling of cellular metabolism.

Hameri T, Boldi MO, Hatzimanikatis V. Hameri T, et al. Among authors: hatzimanikatis v. PLoS Comput Biol. 2019 Dec 9;15(12):e1007536. doi: 10.1371/journal.pcbi.1007536. eCollection 2019 Dec. PLoS Comput Biol. 2019. PMID: 31815929 Free PMC article.

7

Spatio-temporal modeling of the crowding conditions and metabolic variability in microbial communities.

Angeles-Martinez L, Hatzimanikatis V. Angeles-Martinez L, et al. Among authors: hatzimanikatis v. PLoS Comput Biol. 2021 Jul 22;17(7):e1009140. doi: 10.1371/journal.pcbi.1009140. eCollection 2021 Jul. PLoS Comput Biol. 2021. PMID: 34292935 Free PMC article.

8

The influence of the crowding assumptions in biofilm simulations.

Angeles-Martinez L, Hatzimanikatis V. Angeles-Martinez L, et al. Among authors: hatzimanikatis v. PLoS Comput Biol. 2021 Jul 22;17(7):e1009158. doi: 10.1371/journal.pcbi.1009158. eCollection 2021 Jul. PLoS Comput Biol. 2021. PMID: 34292941 Free PMC article.

9

Dynamics of CLIMP-63 S-acylation control ER morphology.

Sandoz PA, Denhardt-Eriksson RA, Abrami L, Abriata LA, Spreemann G, Maclachlan C, Ho S, Kunz B, Hess K, Knott G, S Mesquita F, Hatzimanikatis V, van der Goot FG. Sandoz PA, et al. Among authors: hatzimanikatis v. Nat Commun. 2023 Jan 17;14(1):264. doi: 10.1038/s41467-023-35921-6. Nat Commun. 2023. PMID: 36650170 Free PMC article.

10

From network models to network responses: integration of thermodynamic and kinetic properties of yeast genome-scale metabolic networks.

Soh KC, Miskovic L, Hatzimanikatis V. Soh KC, et al. Among authors: hatzimanikatis v. FEMS Yeast Res. 2012 Mar;12(2):129-43. doi: 10.1111/j.1567-1364.2011.00771.x. Epub 2011 Dec 19. FEMS Yeast Res. 2012. PMID: 22129227 Review.

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