Simmons MP - Search Results

1

Biases of tree-independent-character-subsampling methods.

Simmons MP, Gatesy J. Simmons MP, et al. Mol Phylogenet Evol. 2016 Jul;100:424-443. doi: 10.1016/j.ympev.2016.04.022. Epub 2016 Apr 19. Mol Phylogenet Evol. 2016. PMID: 27103257

2

Limitations of relative apparent synapomorphy analysis (RASA) for measuring phylogenetic signal.

Simmons MP, Randle CP, Freudenstein JV, Wenzel JW. Simmons MP, et al. Mol Biol Evol. 2002 Jan;19(1):14-23. doi: 10.1093/oxfordjournals.molbev.a003978. Mol Biol Evol. 2002. PMID: 11752186

3

Uninode coding vs gene tree parsimony for phylogenetic reconstruction using duplicate genes.

Simmons MP, Freudenstein JV. Simmons MP, et al. Mol Phylogenet Evol. 2002 Jun;23(3):481-98. doi: 10.1016/s1055-7903(02)00033-7. Mol Phylogenet Evol. 2002. PMID: 12099800

4

Amino acid vs. nucleotide characters: challenging preconceived notions.

Simmons MP, Ochoterena H, Freudenstein JV. Simmons MP, et al. Mol Phylogenet Evol. 2002 Jul;24(1):78-90. doi: 10.1016/s1055-7903(02)00202-6. Mol Phylogenet Evol. 2002. PMID: 12128030

5

The effects of increasing genetic distance on alignment of, and tree construction from, rDNA internal transcribed spacer sequences.

Simmons MP, Freudenstein JV. Simmons MP, et al. Mol Phylogenet Evol. 2003 Mar;26(3):444-51. doi: 10.1016/s1055-7903(02)00366-4. Mol Phylogenet Evol. 2003. PMID: 12644403

6

How meaningful are Bayesian support values?

Simmons MP, Pickett KM, Miya M. Simmons MP, et al. Mol Biol Evol. 2004 Jan;21(1):188-99. doi: 10.1093/molbev/msh014. Epub 2003 Oct 31. Mol Biol Evol. 2004. PMID: 14595090

7

Efficiently resolving the basal clades of a phylogenetic tree using Bayesian and parsimony approaches: a case study using mitogenomic data from 100 higher teleost fishes.

Simmons MP, Miya M. Simmons MP, et al. Mol Phylogenet Evol. 2004 Apr;31(1):351-62. doi: 10.1016/j.ympev.2003.08.004. Mol Phylogenet Evol. 2004. PMID: 15019630

8

Independence of alignment and tree search.

Simmons MP. Simmons MP. Mol Phylogenet Evol. 2004 Jun;31(3):874-9. doi: 10.1016/j.ympev.2003.10.008. Mol Phylogenet Evol. 2004. PMID: 15120385

9

Relative character-state space, amount of potential phylogenetic information, and heterogeneity of nucleotide and amino acid characters.

Simmons MP, Carr TG, O'Neill K. Simmons MP, et al. Mol Phylogenet Evol. 2004 Sep;32(3):913-26. doi: 10.1016/j.ympev.2004.04.011. Mol Phylogenet Evol. 2004. PMID: 15288066

10

Phylogeny of the Cucurbitales based on DNA sequences of nine loci from three genomes: implications for morphological and sexual system evolution.

Zhang LB, Simmons MP, Kocyan A, Renner SS. Zhang LB, et al. Among authors: simmons mp. Mol Phylogenet Evol. 2006 May;39(2):305-22. doi: 10.1016/j.ympev.2005.10.002. Epub 2005 Nov 15. Mol Phylogenet Evol. 2006. PMID: 16293423

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