Honavar VG - Search Results

1

Sequence-Based Prediction of RNA-Binding Residues in Proteins.

Walia RR, El-Manzalawy Y, Honavar VG, Dobbs D. Walia RR, et al. Among authors: honavar vg. Methods Mol Biol. 2017;1484:205-235. doi: 10.1007/978-1-4939-6406-2_15. Methods Mol Biol. 2017. PMID: 27787829 Free PMC article.

2

A proteomic analysis of maize chloroplast biogenesis.

Lonosky PM, Zhang X, Honavar VG, Dobbs DL, Fu A, Rodermel SR. Lonosky PM, et al. Among authors: honavar vg. Plant Physiol. 2004 Feb;134(2):560-74. doi: 10.1104/pp.103.032003. Plant Physiol. 2004. PMID: 14966246 Free PMC article.

3

A two-stage classifier for identification of protein-protein interface residues.

Yan C, Dobbs D, Honavar V. Yan C, et al. Bioinformatics. 2004 Aug 4;20 Suppl 1:i371-8. doi: 10.1093/bioinformatics/bth920. Bioinformatics. 2004. PMID: 15262822

4

Predicting binding sites of hydrolase-inhibitor complexes by combining several methods.

Sen TZ, Kloczkowski A, Jernigan RL, Yan C, Honavar V, Ho KM, Wang CZ, Ihm Y, Cao H, Gu X, Dobbs D. Sen TZ, et al. BMC Bioinformatics. 2004 Dec 17;5:205. doi: 10.1186/1471-2105-5-205. BMC Bioinformatics. 2004. PMID: 15606919 Free PMC article.

5

Predicting DNA-binding sites of proteins from amino acid sequence.

Yan C, Terribilini M, Wu F, Jernigan RL, Dobbs D, Honavar V. Yan C, et al. BMC Bioinformatics. 2006 May 19;7:262. doi: 10.1186/1471-2105-7-262. BMC Bioinformatics. 2006. PMID: 16712732 Free PMC article.

6

Prediction of RNA binding sites in proteins from amino acid sequence.

Terribilini M, Lee JH, Yan C, Jernigan RL, Honavar V, Dobbs D. Terribilini M, et al. RNA. 2006 Aug;12(8):1450-62. doi: 10.1261/rna.2197306. Epub 2006 Jun 21. RNA. 2006. PMID: 16790841 Free PMC article.

7

Identifying interaction sites in "recalcitrant" proteins: predicted protein and RNA binding sites in rev proteins of HIV-1 and EIAV agree with experimental data.

Terribilini M, Lee JH, Yan C, Jernigan RL, Carpenter S, Honavar V, Dobbs D. Terribilini M, et al. Pac Symp Biocomput. 2006:415-26. Pac Symp Biocomput. 2006. PMID: 17094257 Free PMC article.

8

RNABindR: a server for analyzing and predicting RNA-binding sites in proteins.

Terribilini M, Sander JD, Lee JH, Zaback P, Jernigan RL, Honavar V, Dobbs D. Terribilini M, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W578-84. doi: 10.1093/nar/gkm294. Epub 2007 May 5. Nucleic Acids Res. 2007. PMID: 17483510 Free PMC article.

9

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach.

Andorf C, Dobbs D, Honavar V. Andorf C, et al. BMC Bioinformatics. 2007 Aug 3;8:284. doi: 10.1186/1471-2105-8-284. BMC Bioinformatics. 2007. PMID: 17683567 Free PMC article.

10

Characterization of protein-protein interfaces.

Yan C, Wu F, Jernigan RL, Dobbs D, Honavar V. Yan C, et al. Protein J. 2008 Jan;27(1):59-70. doi: 10.1007/s10930-007-9108-x. Protein J. 2008. PMID: 17851740 Free PMC article.

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