Chalkley RJ - Search Results

1

The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics.

Vizcaíno JA, Mayer G, Perkins S, Barsnes H, Vaudel M, Perez-Riverol Y, Ternent T, Uszkoreit J, Eisenacher M, Fischer L, Rappsilber J, Netz E, Walzer M, Kohlbacher O, Leitner A, Chalkley RJ, Ghali F, Martínez-Bartolomé S, Deutsch EW, Jones AR. Vizcaíno JA, et al. Among authors: chalkley rj. Mol Cell Proteomics. 2017 Jul;16(7):1275-1285. doi: 10.1074/mcp.M117.068429. Epub 2017 May 17. Mol Cell Proteomics. 2017. PMID: 28515314 Free PMC article.

2

Bioinformatic methods to exploit mass spectrometric data for proteomic applications.

Chalkley RJ, Hansen KC, Baldwin MA. Chalkley RJ, et al. Methods Enzymol. 2005;402:289-312. doi: 10.1016/S0076-6879(05)02009-4. Methods Enzymol. 2005. PMID: 16401513 Review.

3

In-depth analysis of tandem mass spectrometry data from disparate instrument types.

Chalkley RJ, Baker PR, Medzihradszky KF, Lynn AJ, Burlingame AL. Chalkley RJ, et al. Mol Cell Proteomics. 2008 Dec;7(12):2386-98. doi: 10.1074/mcp.M800021-MCP200. Epub 2008 Jul 24. Mol Cell Proteomics. 2008. PMID: 18653769 Free PMC article.

4

Identification of new p53 acetylation sites in COS-1 cells.

Joubel A, Chalkley RJ, Medzihradszky KF, Hondermarck H, Burlingame AL. Joubel A, et al. Among authors: chalkley rj. Mol Cell Proteomics. 2009 Jun;8(6):1167-73. doi: 10.1074/mcp.M800487-MCP200. Epub 2009 Jan 19. Mol Cell Proteomics. 2009. PMID: 19155208 Free PMC article.

5

Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides.

Chu F, Baker PR, Burlingame AL, Chalkley RJ. Chu F, et al. Among authors: chalkley rj. Mol Cell Proteomics. 2010 Jan;9(1):25-31. doi: 10.1074/mcp.M800555-MCP200. Epub 2009 Oct 6. Mol Cell Proteomics. 2010. PMID: 19809093 Free PMC article.

6

Improving software performance for peptide electron transfer dissociation data analysis by implementation of charge state- and sequence-dependent scoring.

Baker PR, Medzihradszky KF, Chalkley RJ. Baker PR, et al. Among authors: chalkley rj. Mol Cell Proteomics. 2010 Sep;9(9):1795-803. doi: 10.1074/mcp.M110.000422. Epub 2010 May 31. Mol Cell Proteomics. 2010. PMID: 20513802 Free PMC article.

7

Modification site localization scoring integrated into a search engine.

Baker PR, Trinidad JC, Chalkley RJ. Baker PR, et al. Among authors: chalkley rj. Mol Cell Proteomics. 2011 Jul;10(7):M111.008078. doi: 10.1074/mcp.M111.008078. Epub 2011 Apr 13. Mol Cell Proteomics. 2011. PMID: 21490164 Free PMC article.

8

Modification site localization scoring: strategies and performance.

Chalkley RJ, Clauser KR. Chalkley RJ, et al. Mol Cell Proteomics. 2012 May;11(5):3-14. doi: 10.1074/mcp.R111.015305. Epub 2012 Feb 11. Mol Cell Proteomics. 2012. PMID: 22328712 Free PMC article. Review.

9

The DegraBase: a database of proteolysis in healthy and apoptotic human cells.

Crawford ED, Seaman JE, Agard N, Hsu GW, Julien O, Mahrus S, Nguyen H, Shimbo K, Yoshihara HA, Zhuang M, Chalkley RJ, Wells JA. Crawford ED, et al. Among authors: chalkley rj. Mol Cell Proteomics. 2013 Mar;12(3):813-24. doi: 10.1074/mcp.O112.024372. Epub 2012 Dec 20. Mol Cell Proteomics. 2013. PMID: 23264352 Free PMC article.

10

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

Chalkley RJ, Bandeira N, Chambers MC, Clauser KR, Cottrell JS, Deutsch EW, Kapp EA, Lam HH, McDonald WH, Neubert TA, Sun RX. Chalkley RJ, et al. Mol Cell Proteomics. 2014 Jan;13(1):360-71. doi: 10.1074/mcp.M113.032813. Epub 2013 Oct 31. Mol Cell Proteomics. 2014. PMID: 24187338 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

113 results

Search Page