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Design of Artificial Riboswitches as Biosensors.
Findeiß S, Etzel M, Will S, Mörl M, Stadler PF. Findeiß S, et al. Among authors: will s. Sensors (Basel). 2017 Aug 30;17(9):1990. doi: 10.3390/s17091990. Sensors (Basel). 2017. PMID: 28867802 Free PMC article. Review.
RNAs everywhere: genome-wide annotation of structured RNAs.
Athanasius F Bompfünewerer Consortium; Backofen R, Bernhart SH, Flamm C, Fried C, Fritzsch G, Hackermüller J, Hertel J, Hofacker IL, Missal K, Mosig A, Prohaska SJ, Rose D, Stadler PF, Tanzer A, Washietl S, Will S. Athanasius F Bompfünewerer Consortium, et al. Among authors: will s. J Exp Zool B Mol Dev Evol. 2007 Jan 15;308(1):1-25. doi: 10.1002/jez.b.21130. J Exp Zool B Mol Dev Evol. 2007. PMID: 17171697 Review.
Variations on RNA folding and alignment: lessons from Benasque.
Bompfünewerer AF, Backofen R, Bernhart SH, Hertel J, Hofacker IL, Stadler PF, Will S. Bompfünewerer AF, et al. Among authors: will s. J Math Biol. 2008 Jan;56(1-2):129-44. doi: 10.1007/s00285-007-0107-5. Epub 2007 Jul 5. J Math Biol. 2008. PMID: 17611759
LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search.
Will S, Siebauer MF, Heyne S, Engelhardt J, Stadler PF, Reiche, Backofen R. Will S, et al. Algorithms Mol Biol. 2013 Apr 20;8:14. doi: 10.1186/1748-7188-8-14. eCollection 2013. Algorithms Mol Biol. 2013. PMID: 23601347 Free PMC article.
As a search engine we devised a semi-global scanning variant of LocARNA's algorithm for sequence-structure alignment. The LocARNAscan tool is optimized for speed and low memory consumption. ...In transcriptome-wide applications, such methods will provide accurate st …
As a search engine we devised a semi-global scanning variant of LocARNA's algorithm for sequence-structure alignment. The LocARNAscan …
Temperature-responsive in vitro RNA structurome of Yersinia pseudotuberculosis.
Righetti F, Nuss AM, Twittenhoff C, Beele S, Urban K, Will S, Bernhart SH, Stadler PF, Dersch P, Narberhaus F. Righetti F, et al. Among authors: will s. Proc Natl Acad Sci U S A. 2016 Jun 28;113(26):7237-42. doi: 10.1073/pnas.1523004113. Epub 2016 Jun 13. Proc Natl Acad Sci U S A. 2016. PMID: 27298343 Free PMC article.
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
Grüning BA, Fallmann J, Yusuf D, Will S, Erxleben A, Eggenhofer F, Houwaart T, Batut B, Videm P, Bagnacani A, Wolfien M, Lott SC, Hoogstrate Y, Hess WR, Wolkenhauer O, Hoffmann S, Akalin A, Ohler U, Stadler PF, Backofen R. Grüning BA, et al. Among authors: will s. Nucleic Acids Res. 2017 Jul 3;45(W1):W560-W566. doi: 10.1093/nar/gkx409. Nucleic Acids Res. 2017. PMID: 28582575 Free PMC article.
219 results