Lund O - Search Results

1

RUCS: rapid identification of PCR primers for unique core sequences.

Thomsen MCF, Hasman H, Westh H, Kaya H, Lund O. Thomsen MCF, et al. Among authors: lund o. Bioinformatics. 2017 Dec 15;33(24):3917-3921. doi: 10.1093/bioinformatics/btx526. Bioinformatics. 2017. PMID: 28968748 Free PMC article.

2

A Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome Sequencing Data for Clinical Diagnostics and Surveillance.

Thomsen MC, Ahrenfeldt J, Cisneros JL, Jurtz V, Larsen MV, Hasman H, Aarestrup FM, Lund O. Thomsen MC, et al. Among authors: lund o. PLoS One. 2016 Jun 21;11(6):e0157718. doi: 10.1371/journal.pone.0157718. eCollection 2016. PLoS One. 2016. PMID: 27327771 Free PMC article.

3

Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles.

Roer L, Tchesnokova V, Allesøe R, Muradova M, Chattopadhyay S, Ahrenfeldt J, Thomsen MCF, Lund O, Hansen F, Hammerum AM, Sokurenko E, Hasman H. Roer L, et al. Among authors: lund o. J Clin Microbiol. 2017 Aug;55(8):2538-2543. doi: 10.1128/JCM.00737-17. Epub 2017 Jun 7. J Clin Microbiol. 2017. PMID: 28592545 Free PMC article.

4

SCCmecFinder, a Web-Based Tool for Typing of Staphylococcal Cassette Chromosome mec in Staphylococcus aureus Using Whole-Genome Sequence Data.

Kaya H, Hasman H, Larsen J, Stegger M, Johannesen TB, Allesøe RL, Lemvigh CK, Aarestrup FM, Lund O, Larsen AR. Kaya H, et al. Among authors: lund o. mSphere. 2018 Feb 14;3(1):e00612-17. doi: 10.1128/mSphere.00612-17. eCollection 2018 Jan-Feb. mSphere. 2018. PMID: 29468193 Free PMC article.

5

Identification of acquired antimicrobial resistance genes.

Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV. Zankari E, et al. Among authors: lund o. J Antimicrob Chemother. 2012 Nov;67(11):2640-4. doi: 10.1093/jac/dks261. Epub 2012 Jul 10. J Antimicrob Chemother. 2012. PMID: 22782487 Free PMC article.

6

MHCcluster, a method for functional clustering of MHC molecules.

Thomsen M, Lundegaard C, Buus S, Lund O, Nielsen M. Thomsen M, et al. Among authors: lund o. Immunogenetics. 2013 Sep;65(9):655-65. doi: 10.1007/s00251-013-0714-9. Epub 2013 Jun 18. Immunogenetics. 2013. PMID: 23775223 Free PMC article.

7

Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples.

Hasman H, Saputra D, Sicheritz-Ponten T, Lund O, Svendsen CA, Frimodt-Møller N, Aarestrup FM. Hasman H, et al. Among authors: lund o. J Clin Microbiol. 2014 Jan;52(1):139-46. doi: 10.1128/JCM.02452-13. Epub 2013 Oct 30. J Clin Microbiol. 2014. PMID: 24172157 Free PMC article.

8

Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance.

Nordahl Petersen T, Rasmussen S, Hasman H, Carøe C, Bælum J, Schultz AC, Bergmark L, Svendsen CA, Lund O, Sicheritz-Pontén T, Aarestrup FM. Nordahl Petersen T, et al. Among authors: lund o. Sci Rep. 2015 Jul 10;5:11444. doi: 10.1038/srep11444. Sci Rep. 2015. PMID: 26161690 Free PMC article.

9

Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.

Ahrenfeldt J, Skaarup C, Hasman H, Pedersen AG, Aarestrup FM, Lund O. Ahrenfeldt J, et al. Among authors: lund o. BMC Genomics. 2017 Jan 5;18(1):19. doi: 10.1186/s12864-016-3407-6. BMC Genomics. 2017. PMID: 28056767 Free PMC article.

10

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads.

Petersen TN, Lukjancenko O, Thomsen MCF, Maddalena Sperotto M, Lund O, Møller Aarestrup F, Sicheritz-Pontén T. Petersen TN, et al. Among authors: lund o. PLoS One. 2017 May 3;12(5):e0176469. doi: 10.1371/journal.pone.0176469. eCollection 2017. PLoS One. 2017. PMID: 28467460 Free PMC article.

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