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GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Pühler A. Meyer F, et al. Among authors: rupp o. Nucleic Acids Res. 2003 Apr 15;31(8):2187-95. doi: 10.1093/nar/gkg312. Nucleic Acids Res. 2003. PMID: 12682369 Free PMC article.
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
Thieme F, Koebnik R, Bekel T, Berger C, Boch J, Büttner D, Caldana C, Gaigalat L, Goesmann A, Kay S, Kirchner O, Lanz C, Linke B, McHardy AC, Meyer F, Mittenhuber G, Nies DH, Niesbach-Klösgen U, Patschkowski T, Rückert C, Rupp O, Schneiker S, Schuster SC, Vorhölter FJ, Weber E, Pühler A, Bonas U, Bartels D, Kaiser O. Thieme F, et al. Among authors: rupp o. J Bacteriol. 2005 Nov;187(21):7254-66. doi: 10.1128/JB.187.21.7254-7266.2005. J Bacteriol. 2005. PMID: 16237009 Free PMC article.
The Sequence Analysis and Management System -- SAMS-2.0: data management and sequence analysis adapted to changing requirements from traditional sanger sequencing to ultrafast sequencing technologies.
Bekel T, Henckel K, Küster H, Meyer F, Mittard Runte V, Neuweger H, Paarmann D, Rupp O, Zakrzewski M, Pühler A, Stoye J, Goesmann A. Bekel T, et al. Among authors: rupp o. J Biotechnol. 2009 Mar 10;140(1-2):3-12. doi: 10.1016/j.jbiotec.2009.01.006. J Biotechnol. 2009. PMID: 19297685
Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
Wibberg D, Blom J, Jaenicke S, Kollin F, Rupp O, Scharf B, Schneiker-Bekel S, Sczcepanowski R, Goesmann A, Setubal JC, Schmitt R, Pühler A, Schlüter A. Wibberg D, et al. Among authors: rupp o. J Biotechnol. 2011 Aug 20;155(1):50-62. doi: 10.1016/j.jbiotec.2011.01.010. Epub 2011 Feb 15. J Biotechnol. 2011. PMID: 21329740
Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing.
Becker J, Hackl M, Rupp O, Jakobi T, Schneider J, Szczepanowski R, Bekel T, Borth N, Goesmann A, Grillari J, Kaltschmidt C, Noll T, Pühler A, Tauch A, Brinkrolf K. Becker J, et al. Among authors: rupp o. J Biotechnol. 2011 Dec 10;156(3):227-35. doi: 10.1016/j.jbiotec.2011.09.014. Epub 2011 Sep 17. J Biotechnol. 2011. PMID: 21945585
Next-generation sequencing of the CHO cell transcriptome.
Becker J, Timmermann C, Jakobi T, Rupp O, Szczepanowski R, Hackl M, Goesmann A, Tauch A, Borth N, Grillari J, Pühler A, Noll T, Brinkrolf K. Becker J, et al. Among authors: rupp o. BMC Proc. 2011 Nov 22;5 Suppl 8(Suppl 8):P6. doi: 10.1186/1753-6561-5-S8-P6. eCollection 2011. BMC Proc. 2011. PMID: 22373212 Free PMC article. No abstract available.
65 results