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IEDB-AR: immune epitope database-analysis resource in 2019.
Dhanda SK, Mahajan S, Paul S, Yan Z, Kim H, Jespersen MC, Jurtz V, Andreatta M, Greenbaum JA, Marcatili P, Sette A, Nielsen M, Peters B. Dhanda SK, et al. Among authors: yan z. Nucleic Acids Res. 2019 Jul 2;47(W1):W502-W506. doi: 10.1093/nar/gkz452. Nucleic Acids Res. 2019. PMID: 31114900 Free PMC article.
Benchmark datasets of immune receptor-epitope structural complexes.
Mahajan S, Yan Z, Jespersen MC, Jensen KK, Marcatili P, Nielsen M, Sette A, Peters B. Mahajan S, et al. Among authors: yan z. BMC Bioinformatics. 2019 Oct 10;20(1):490. doi: 10.1186/s12859-019-3109-6. BMC Bioinformatics. 2019. PMID: 31601176 Free PMC article.
TCRMatch: Predicting T-Cell Receptor Specificity Based on Sequence Similarity to Previously Characterized Receptors.
Chronister WD, Crinklaw A, Mahajan S, Vita R, Koşaloğlu-Yalçın Z, Yan Z, Greenbaum JA, Jessen LE, Nielsen M, Christley S, Cowell LG, Sette A, Peters B. Chronister WD, et al. Among authors: yan z. Front Immunol. 2021 Mar 11;12:640725. doi: 10.3389/fimmu.2021.640725. eCollection 2021. Front Immunol. 2021. PMID: 33777034 Free PMC article.
Predicting the Success of Fmoc-Based Peptide Synthesis.
Gutman I, Gutman R, Sidney J, Chihab L, Mishto M, Liepe J, Chiem A, Greenbaum J, Yan Z, Sette A, Koşaloğlu-Yalçın Z, Peters B. Gutman I, et al. Among authors: yan z. ACS Omega. 2022 Jun 27;7(27):23771-23781. doi: 10.1021/acsomega.2c02425. eCollection 2022 Jul 12. ACS Omega. 2022. PMID: 35847273 Free PMC article.
Next-generation IEDB tools: a platform for epitope prediction and analysis.
Yan Z, Kim K, Kim H, Ha B, Gambiez A, Bennett J, de Almeida Mendes MF, Trevizani R, Mahita J, Richardson E, Marrama D, Blazeska N, Koşaloğlu-Yalçın Z, Nielsen M, Sette A, Peters B, Greenbaum JA. Yan Z, et al. Nucleic Acids Res. 2024 May 23:gkae407. doi: 10.1093/nar/gkae407. Online ahead of print. Nucleic Acids Res. 2024. PMID: 38783079
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