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Metagenomic Nanopore Sequencing of Influenza Virus Direct from Clinical Respiratory Samples.
Lewandowski K, Xu Y, Pullan ST, Lumley SF, Foster D, Sanderson N, Vaughan A, Morgan M, Bright N, Kavanagh J, Vipond R, Carroll M, Marriott AC, Gooch KE, Andersson M, Jeffery K, Peto TEA, Crook DW, Walker AS, Matthews PC. Lewandowski K, et al. J Clin Microbiol. 2019 Dec 23;58(1):e00963-19. doi: 10.1128/JCM.00963-19. Print 2019 Dec 23. J Clin Microbiol. 2019. PMID: 31666364 Free PMC article.
Assessment of metagenomic Nanopore and Illumina sequencing for recovering whole genome sequences of chikungunya and dengue viruses directly from clinical samples.
Kafetzopoulou LE, Efthymiadis K, Lewandowski K, Crook A, Carter D, Osborne J, Aarons E, Hewson R, Hiscox JA, Carroll MW, Vipond R, Pullan ST. Kafetzopoulou LE, et al. Euro Surveill. 2018 Dec;23(50):1800228. doi: 10.2807/1560-7917.ES.2018.23.50.1800228. Euro Surveill. 2018. PMID: 30563591 Free PMC article.
Nanopore metagenomic sequencing to investigate nosocomial transmission of human metapneumovirus from a unique genetic group among haematology patients in the United Kingdom.
Xu Y, Lewandowski K, Jeffery K, Downs LO, Foster D, Sanderson ND, Kavanagh J, Vaughan A, Salvagno C, Vipond R, Carroll M, Danby R, Peto T, Crook D, Walker AS, Matthews PC, Pullan ST. Xu Y, et al. J Infect. 2020 May;80(5):571-577. doi: 10.1016/j.jinf.2020.02.003. Epub 2020 Feb 22. J Infect. 2020. PMID: 32092386 Free article.
Diagnosis of SARS-CoV-2 Infection with LamPORE, a High-Throughput Platform Combining Loop-Mediated Isothermal Amplification and Nanopore Sequencing.
Peto L, Rodger G, Carter DP, Osman KL, Yavuz M, Johnson K, Raza M, Parker MD, Wyles MD, Andersson M, Justice A, Vaughan A, Hoosdally S, Stoesser N, Matthews PC, Eyre DW, Peto TEA, Carroll MW, de Silva TI, Crook DW, Evans CM, Pullan ST. Peto L, et al. Among authors: pullan st. J Clin Microbiol. 2021 May 19;59(6):e03271-20. doi: 10.1128/JCM.03271-20. Print 2021 May 19. J Clin Microbiol. 2021. PMID: 33782112 Free PMC article.
Nanopore metagenomic sequencing of influenza virus directly from respiratory samples: diagnosis, drug resistance and nosocomial transmission, United Kingdom, 2018/19 influenza season.
Xu Y, Lewandowski K, Downs LO, Kavanagh J, Hender T, Lumley S, Jeffery K, Foster D, Sanderson ND, Vaughan A, Morgan M, Vipond R, Carroll M, Peto T, Crook D, Walker AS, Matthews PC, Pullan ST. Xu Y, et al. Among authors: pullan st. Euro Surveill. 2021 Jul;26(27):2000004. doi: 10.2807/1560-7917.ES.2021.26.27.2000004. Euro Surveill. 2021. PMID: 34240696 Free PMC article.
Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism.
Moore SC, Penrice-Randal R, Alruwaili M, Randle N, Armstrong S, Hartley C, Haldenby S, Dong X, Alrezaihi A, Almsaud M, Bentley E, Clark J, García-Dorival I, Gilmore P, Han X, Jones B, Luu L, Sharma P, Shawli G, Sun Y, Zhao Q, Pullan ST, Carter DP, Bewley K, Dunning J, Zhou EM, Solomon T, Beadsworth M, Cruise J, Crook DW, Matthews DA, Davidson AD, Mahmood Z, Aljabr W, Druce J, Vipond R, Ng L, Renia L, Openshaw PJM, Baillie JK, Carroll MW, Stewart J, Darby A, Semple M, Turtle L, Hiscox JA. Moore SC, et al. Among authors: pullan st. Viruses. 2020 Oct 14;12(10):1164. doi: 10.3390/v12101164. Viruses. 2020. PMID: 33066701 Free PMC article.
Metagenomic sequencing at the epicenter of the Nigeria 2018 Lassa fever outbreak.
Kafetzopoulou LE, Pullan ST, Lemey P, Suchard MA, Ehichioya DU, Pahlmann M, Thielebein A, Hinzmann J, Oestereich L, Wozniak DM, Efthymiadis K, Schachten D, Koenig F, Matjeschk J, Lorenzen S, Lumley S, Ighodalo Y, Adomeh DI, Olokor T, Omomoh E, Omiunu R, Agbukor J, Ebo B, Aiyepada J, Ebhodaghe P, Osiemi B, Ehikhametalor S, Akhilomen P, Airende M, Esumeh R, Muoebonam E, Giwa R, Ekanem A, Igenegbale G, Odigie G, Okonofua G, Enigbe R, Oyakhilome J, Yerumoh EO, Odia I, Aire C, Okonofua M, Atafo R, Tobin E, Asogun D, Akpede N, Okokhere PO, Rafiu MO, Iraoyah KO, Iruolagbe CO, Akhideno P, Erameh C, Akpede G, Isibor E, Naidoo D, Hewson R, Hiscox JA, Vipond R, Carroll MW, Ihekweazu C, Formenty P, Okogbenin S, Ogbaini-Emovon E, Günther S, Duraffour S. Kafetzopoulou LE, et al. Among authors: pullan st. Science. 2019 Jan 4;363(6422):74-77. doi: 10.1126/science.aau9343. Science. 2019. PMID: 30606844 Free PMC article.
79 results