Zimmermann J - Search Results

1

Structure and Dynamics of Stacking Interactions in an Antibody Binding Site.

Adhikary R, Zimmermann J, Stanfield RL, Wilson IA, Yu W, Oda M, Romesberg FE. Adhikary R, et al. Among authors: zimmermann j. Biochemistry. 2019 Jul 9;58(27):2987-2995. doi: 10.1021/acs.biochem.9b00119. Epub 2019 Jun 19. Biochemistry. 2019. PMID: 31243995 Free PMC article.

2

Exploring the energy landscape of antibody-antigen complexes: protein dynamics, flexibility, and molecular recognition.

Thielges MC, Zimmermann J, Yu W, Oda M, Romesberg FE. Thielges MC, et al. Among authors: zimmermann j. Biochemistry. 2008 Jul 8;47(27):7237-47. doi: 10.1021/bi800374q. Epub 2008 Jun 13. Biochemistry. 2008. PMID: 18549243

3

Adaptive mutations alter antibody structure and dynamics during affinity maturation.

Adhikary R, Yu W, Oda M, Walker RC, Chen T, Stanfield RL, Wilson IA, Zimmermann J, Romesberg FE. Adhikary R, et al. Among authors: zimmermann j. Biochemistry. 2015 Mar 24;54(11):2085-93. doi: 10.1021/bi501417q. Epub 2015 Mar 10. Biochemistry. 2015. PMID: 25756188 Free PMC article.

4

Molecular description of flexibility in an antibody combining site.

Zimmermann J, Romesberg FE, Brooks CL 3rd, Thorpe IF. Zimmermann J, et al. J Phys Chem B. 2010 Jun 3;114(21):7359-70. doi: 10.1021/jp906421v. J Phys Chem B. 2010. PMID: 20455589 Free PMC article.

5

Protein dynamics and the diversity of an antibody response.

Adhikary R, Yu W, Oda M, Zimmermann J, Romesberg FE. Adhikary R, et al. Among authors: zimmermann j. J Biol Chem. 2012 Aug 3;287(32):27139-47. doi: 10.1074/jbc.M112.372698. Epub 2012 Jun 8. J Biol Chem. 2012. PMID: 22685303 Free PMC article.

6

Conformational Heterogeneity and DNA Recognition by the Morphogen Bicoid.

Adhikary R, Tan YX, Liu J, Zimmermann J, Holcomb M, Yvellez C, Dawson PE, Romesberg FE. Adhikary R, et al. Among authors: zimmermann j. Biochemistry. 2017 Jun 6;56(22):2787-2793. doi: 10.1021/acs.biochem.7b00255. Epub 2017 May 26. Biochemistry. 2017. PMID: 28547993

7

Characterization of alkaline transitions in ferricytochrome c using carbon-deuterium infrared probes.

Weinkam P, Zimmermann J, Sagle LB, Matsuda S, Dawson PE, Wolynes PG, Romesberg FE. Weinkam P, et al. Among authors: zimmermann j. Biochemistry. 2008 Dec 23;47(51):13470-80. doi: 10.1021/bi801223n. Biochemistry. 2008. PMID: 19035653 Free PMC article.

8

Carbon-deuterium bonds as non-perturbative infrared probes of protein dynamics, electrostatics, heterogeneity, and folding.

Zimmermann J, Romesberg FE. Zimmermann J, et al. Methods Mol Biol. 2014;1084:101-19. doi: 10.1007/978-1-62703-658-0_6. Methods Mol Biol. 2014. PMID: 24061918

9

Topological Evidence of Previously Overlooked N_i+1-H···N_i H-Bonds and Their Contribution to Protein Structure and Stability.

Holcomb M, Adhikary R, Zimmermann J, Romesberg FE. Holcomb M, et al. Among authors: zimmermann j. J Phys Chem A. 2018 Jan 11;122(1):446-450. doi: 10.1021/acs.jpca.7b11013. Epub 2017 Dec 20. J Phys Chem A. 2018. PMID: 29260873

10

Antibody evolution constrains conformational heterogeneity by tailoring protein dynamics.

Zimmermann J, Oakman EL, Thorpe IF, Shi X, Abbyad P, Brooks CL 3rd, Boxer SG, Romesberg FE. Zimmermann J, et al. Proc Natl Acad Sci U S A. 2006 Sep 12;103(37):13722-7. doi: 10.1073/pnas.0603282103. Epub 2006 Sep 5. Proc Natl Acad Sci U S A. 2006. PMID: 16954202 Free PMC article.

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