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A genome draft of the legless anguid lizard, Ophisaurus gracilis.
Song B, Cheng S, Sun Y, Zhong X, Jin J, Guan R, Murphy RW, Che J, Zhang Y, Liu X. Song B, et al. Among authors: liu x. Gigascience. 2015 Apr 9;4:17. doi: 10.1186/s13742-015-0056-7. eCollection 2015. Gigascience. 2015. PMID: 25859342 Free PMC article.
Draft genome of the living fossil Ginkgo biloba.
Guan R, Zhao Y, Zhang H, Fan G, Liu X, Zhou W, Shi C, Wang J, Liu W, Liang X, Fu Y, Ma K, Zhao L, Zhang F, Lu Z, Lee SM, Xu X, Wang J, Yang H, Fu C, Ge S, Chen W. Guan R, et al. Among authors: liu x, liu w. Gigascience. 2016 Nov 21;5(1):49. doi: 10.1186/s13742-016-0154-1. Gigascience. 2016. PMID: 27871309 Free PMC article.
Is there foul play in the leaf pocket? The metagenome of floating fern Azolla reveals endophytes that do not fix N2 but may denitrify.
Dijkhuizen LW, Brouwer P, Bolhuis H, Reichart GJ, Koppers N, Huettel B, Bolger AM, Li FW, Cheng S, Liu X, Wong GK, Pryer K, Weber A, Bräutigam A, Schluepmann H. Dijkhuizen LW, et al. Among authors: liu x. New Phytol. 2018 Jan;217(1):453-466. doi: 10.1111/nph.14843. Epub 2017 Oct 30. New Phytol. 2018. PMID: 29084347 Free PMC article.
10KP: A phylodiverse genome sequencing plan.
Cheng S, Melkonian M, Smith SA, Brockington S, Archibald JM, Delaux PM, Li FW, Melkonian B, Mavrodiev EV, Sun W, Fu Y, Yang H, Soltis DE, Graham SW, Soltis PS, Liu X, Xu X, Wong GK. Cheng S, et al. Among authors: liu x. Gigascience. 2018 Mar 1;7(3):1-9. doi: 10.1093/gigascience/giy013. Gigascience. 2018. PMID: 29618049 Free PMC article.
Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis.
Griesmann M, Chang Y, Liu X, Song Y, Haberer G, Crook MB, Billault-Penneteau B, Lauressergues D, Keller J, Imanishi L, Roswanjaya YP, Kohlen W, Pujic P, Battenberg K, Alloisio N, Liang Y, Hilhorst H, Salgado MG, Hocher V, Gherbi H, Svistoonoff S, Doyle JJ, He S, Xu Y, Xu S, Qu J, Gao Q, Fang X, Fu Y, Normand P, Berry AM, Wall LG, Ané JM, Pawlowski K, Xu X, Yang H, Spannagl M, Mayer KFX, Wong GK, Parniske M, Delaux PM, Cheng S. Griesmann M, et al. Among authors: liu x. Science. 2018 Jul 13;361(6398):eaat1743. doi: 10.1126/science.aat1743. Epub 2018 May 24. Science. 2018. PMID: 29794220
Fern genomes elucidate land plant evolution and cyanobacterial symbioses.
Li FW, Brouwer P, Carretero-Paulet L, Cheng S, de Vries J, Delaux PM, Eily A, Koppers N, Kuo LY, Li Z, Simenc M, Small I, Wafula E, Angarita S, Barker MS, Bräutigam A, dePamphilis C, Gould S, Hosmani PS, Huang YM, Huettel B, Kato Y, Liu X, Maere S, McDowell R, Mueller LA, Nierop KGJ, Rensing SA, Robison T, Rothfels CJ, Sigel EM, Song Y, Timilsena PR, Van de Peer Y, Wang H, Wilhelmsson PKI, Wolf PG, Xu X, Der JP, Schluepmann H, Wong GK, Pryer KM. Li FW, et al. Among authors: liu x. Nat Plants. 2018 Jul;4(7):460-472. doi: 10.1038/s41477-018-0188-8. Epub 2018 Jul 2. Nat Plants. 2018. PMID: 29967517 Free PMC article.
Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil.
Zhao YP, Fan G, Yin PP, Sun S, Li N, Hong X, Hu G, Zhang H, Zhang FM, Han JD, Hao YJ, Xu Q, Yang X, Xia W, Chen W, Lin HY, Zhang R, Chen J, Zheng XM, Lee SM, Lee J, Uehara K, Wang J, Yang H, Fu CX, Liu X, Xu X, Ge S. Zhao YP, et al. Among authors: liu x. Nat Commun. 2019 Sep 13;10(1):4201. doi: 10.1038/s41467-019-12133-5. Nat Commun. 2019. PMID: 31519986 Free PMC article.
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