Medvedev P - Search Results

1

Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes.

Vegesna R, Tomaszkiewicz M, Medvedev P, Makova KD. Vegesna R, et al. Among authors: medvedev p. PLoS Genet. 2019 Sep 16;15(9):e1008369. doi: 10.1371/journal.pgen.1008369. eCollection 2019 Sep. PLoS Genet. 2019. PMID: 31525193 Free PMC article.

2

Computational pan-genomics: status, promises and challenges.

Computational Pan-Genomics Consortium. Computational Pan-Genomics Consortium. Brief Bioinform. 2018 Jan 1;19(1):118-135. doi: 10.1093/bib/bbw089. Brief Bioinform. 2018. PMID: 27769991 Free PMC article. Review.

3

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications.

Fungtammasan A, Ananda G, Hile SE, Su MS, Sun C, Harris R, Medvedev P, Eckert K, Makova KD. Fungtammasan A, et al. Among authors: medvedev p. Genome Res. 2015 May;25(5):736-49. doi: 10.1101/gr.185892.114. Epub 2015 Mar 30. Genome Res. 2015. PMID: 25823460 Free PMC article.

4

A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y.

Tomaszkiewicz M, Rangavittal S, Cechova M, Campos Sanchez R, Fescemyer HW, Harris R, Ye D, O'Brien PC, Chikhi R, Ryder OA, Ferguson-Smith MA, Medvedev P, Makova KD. Tomaszkiewicz M, et al. Among authors: medvedev p. Genome Res. 2016 Apr;26(4):530-40. doi: 10.1101/gr.199448.115. Epub 2016 Mar 2. Genome Res. 2016. PMID: 26934921 Free PMC article.

5

Y and W Chromosome Assemblies: Approaches and Discoveries.

Tomaszkiewicz M, Medvedev P, Makova KD. Tomaszkiewicz M, et al. Among authors: medvedev p. Trends Genet. 2017 Apr;33(4):266-282. doi: 10.1016/j.tig.2017.01.008. Epub 2017 Feb 22. Trends Genet. 2017. PMID: 28236503 Review.

6

RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly.

Rangavittal S, Harris RS, Cechova M, Tomaszkiewicz M, Chikhi R, Makova KD, Medvedev P. Rangavittal S, et al. Among authors: medvedev p. Bioinformatics. 2018 Apr 1;34(7):1125-1131. doi: 10.1093/bioinformatics/btx771. Bioinformatics. 2018. PMID: 29194476 Free PMC article.

7

Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon.

Sahlin K, Tomaszkiewicz M, Makova KD, Medvedev P. Sahlin K, et al. Among authors: medvedev p. Nat Commun. 2018 Nov 2;9(1):4601. doi: 10.1038/s41467-018-06910-x. Nat Commun. 2018. PMID: 30389934 Free PMC article.

8

Correcting palindromes in long reads after whole-genome amplification.

Warris S, Schijlen E, van de Geest H, Vegesna R, Hesselink T, Te Lintel Hekkert B, Sanchez Perez G, Medvedev P, Makova KD, de Ridder D. Warris S, et al. Among authors: medvedev p. BMC Genomics. 2018 Nov 6;19(1):798. doi: 10.1186/s12864-018-5164-1. BMC Genomics. 2018. PMID: 30400848 Free PMC article.

9

DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies.

Rangavittal S, Stopa N, Tomaszkiewicz M, Sahlin K, Makova KD, Medvedev P. Rangavittal S, et al. Among authors: medvedev p. BMC Genomics. 2019 Aug 9;20(1):641. doi: 10.1186/s12864-019-5996-3. BMC Genomics. 2019. PMID: 31399045 Free PMC article.

10

Ampliconic Genes on the Great Ape Y Chromosomes: Rapid Evolution of Copy Number but Conservation of Expression Levels.

Vegesna R, Tomaszkiewicz M, Ryder OA, Campos-Sánchez R, Medvedev P, DeGiorgio M, Makova KD. Vegesna R, et al. Among authors: medvedev p. Genome Biol Evol. 2020 Jun 1;12(6):842-859. doi: 10.1093/gbe/evaa088. Genome Biol Evol. 2020. PMID: 32374870 Free PMC article.

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