DePasquale EAK - Search Results

1

cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes.

DePasquale EAK, Schnell D, Dexheimer P, Ferchen K, Hay S, Chetal K, Valiente-Alandí Í, Blaxall BC, Grimes HL, Salomonis N. DePasquale EAK, et al. Nucleic Acids Res. 2019 Dec 2;47(21):e138. doi: 10.1093/nar/gkz789. Nucleic Acids Res. 2019. PMID: 31529053 Free PMC article.

2

DoubletDecon: Deconvoluting Doublets from Single-Cell RNA-Sequencing Data.

DePasquale EAK, Schnell DJ, Van Camp PJ, Valiente-Alandí Í, Blaxall BC, Grimes HL, Singh H, Salomonis N. DePasquale EAK, et al. Cell Rep. 2019 Nov 5;29(6):1718-1727.e8. doi: 10.1016/j.celrep.2019.09.082. Cell Rep. 2019. PMID: 31693907 Free PMC article.

3

Protocol for Identification and Removal of Doublets with DoubletDecon.

DePasquale EAK, Schnell D, Chetal K, Salomonis N. DePasquale EAK, et al. STAR Protoc. 2020 Aug 11;1(2):100085. doi: 10.1016/j.xpro.2020.100085. eCollection 2020 Sep 18. STAR Protoc. 2020. PMID: 33111118 Free PMC article.

4

KRSA: An R package and R Shiny web application for an end-to-end upstream kinase analysis of kinome array data.

DePasquale EAK, Alganem K, Bentea E, Nawreen N, McGuire JL, Tomar T, Naji F, Hilhorst R, Meller J, McCullumsmith RE. DePasquale EAK, et al. PLoS One. 2021 Dec 17;16(12):e0260440. doi: 10.1371/journal.pone.0260440. eCollection 2021. PLoS One. 2021. PMID: 34919543 Free PMC article.

5

Mitochondrial variant enrichment from high-throughput single-cell RNA sequencing resolves clonal populations.

Miller TE, Lareau CA, Verga JA, DePasquale EAK, Liu V, Ssozi D, Sandor K, Yin Y, Ludwig LS, El Farran CA, Morgan DM, Satpathy AT, Griffin GK, Lane AA, Love JC, Bernstein BE, Sankaran VG, van Galen P. Miller TE, et al. Among authors: depasquale eak. Nat Biotechnol. 2022 Jul;40(7):1030-1034. doi: 10.1038/s41587-022-01210-8. Epub 2022 Feb 24. Nat Biotechnol. 2022. PMID: 35210612 Free PMC article.

6

Connectivity Analyses of Bioenergetic Changes in Schizophrenia: Identification of Novel Treatments.

Sullivan CR, Mielnik CA, O'Donovan SM, Funk AJ, Bentea E, DePasquale EA, Alganem K, Wen Z, Haroutunian V, Katsel P, Ramsey AJ, Meller J, McCullumsmith RE. Sullivan CR, et al. Mol Neurobiol. 2019 Jun;56(6):4492-4517. doi: 10.1007/s12035-018-1390-4. Epub 2018 Oct 18. Mol Neurobiol. 2019. PMID: 30338483 Free PMC article.

7

Traumatic Brain Injury Induces Alterations in Cortical Glutamate Uptake without a Reduction in Glutamate Transporter-1 Protein Expression.

Dorsett CR, McGuire JL, Niedzielko TL, DePasquale EA, Meller J, Floyd CL, McCullumsmith RE. Dorsett CR, et al. J Neurotrauma. 2017 Jan 1;34(1):220-234. doi: 10.1089/neu.2015.4372. Epub 2016 Jul 19. J Neurotrauma. 2017. PMID: 27312729 Free PMC article.

8

Kinase network dysregulation in a human induced pluripotent stem cell model of DISC1 schizophrenia.

Bentea E, Depasquale EAK, O'Donovan SM, Sullivan CR, Simmons M, Meador-Woodruff JH, Zhou Y, Xu C, Bai B, Peng J, Song H, Ming GL, Meller J, Wen Z, McCullumsmith RE. Bentea E, et al. Among authors: depasquale eak. Mol Omics. 2019 Jun 10;15(3):173-188. doi: 10.1039/c8mo00173a. Mol Omics. 2019. PMID: 31106784 Free PMC article.

9

Abnormalities of signal transduction networks in chronic schizophrenia.

McGuire JL, Depasquale EA, Funk AJ, O'Donnovan SM, Hasselfeld K, Marwaha S, Hammond JH, Hartounian V, Meador-Woodruff JH, Meller J, McCullumsmith RE. McGuire JL, et al. NPJ Schizophr. 2017 Sep 12;3(1):30. doi: 10.1038/s41537-017-0032-6. NPJ Schizophr. 2017. PMID: 28900113 Free PMC article.

10

Chronic Dysregulation of Cortical and Subcortical Metabolism After Experimental Traumatic Brain Injury.

McGuire JL, DePasquale EAK, Watanabe M, Anwar F, Ngwenya LB, Atluri G, Romick-Rosendale LE, McCullumsmith RE, Evanson NK. McGuire JL, et al. Among authors: depasquale eak. Mol Neurobiol. 2019 Apr;56(4):2908-2921. doi: 10.1007/s12035-018-1276-5. Epub 2018 Aug 1. Mol Neurobiol. 2019. PMID: 30069831 Free PMC article.

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