den Bakker HC - Search Results

1

SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data.

Zhang S, den Bakker HC, Li S, Chen J, Dinsmore BA, Lane C, Lauer AC, Fields PI, Deng X. Zhang S, et al. Among authors: den bakker hc. Appl Environ Microbiol. 2019 Nov 14;85(23):e01746-19. doi: 10.1128/AEM.01746-19. Print 2019 Dec 1. Appl Environ Microbiol. 2019. PMID: 31540993 Free PMC article.

2

Integrative Assessment of Reduced Listeria monocytogenes Susceptibility to Benzalkonium Chloride in Produce Processing Environments.

He Y, Xu T, Li S, Mann DA, Britton B, Oliver HF, den Bakker HC, Deng X. He Y, et al. Among authors: den bakker hc. Appl Environ Microbiol. 2022 Nov 8;88(21):e0126922. doi: 10.1128/aem.01269-22. Epub 2022 Oct 13. Appl Environ Microbiol. 2022. PMID: 36226965 Free PMC article.

3

16S microbiome analysis of microbial communities in distribution centers handling fresh produce.

Townsend A, den Bakker HC, Mann A, Murphy CM, Strawn LK, Dunn LL. Townsend A, et al. Among authors: den bakker hc. Front Microbiol. 2023 Jul 12;14:1041936. doi: 10.3389/fmicb.2023.1041936. eCollection 2023. Front Microbiol. 2023. PMID: 37502401 Free PMC article.

4

Differential Susceptibility to T Cell-Induced Colitis in Mice: Role of the Intestinal Microbiota.

Reinoso Webb C, den Bakker H, Koboziev I, Jones-Hall Y, Rao Kottapalli K, Ostanin D, Furr KL, Mu Q, Luo XM, Grisham MB. Reinoso Webb C, et al. Inflamm Bowel Dis. 2018 Jan 18;24(2):361-379. doi: 10.1093/ibd/izx014. Inflamm Bowel Dis. 2018. PMID: 29361089 Free PMC article.

5

Prevalence and Antimicrobial Resistance of Campylobacter in Conventional and No Antibiotics Ever Broiler Farms.

Rama EN, Bailey M, Kumar S, Leone C, den Bakker H, Thippareddi H, Singh M. Rama EN, et al. J Food Prot. 2024 Mar;87(3):100238. doi: 10.1016/j.jfp.2024.100238. Epub 2024 Feb 7. J Food Prot. 2024. PMID: 38331218 Free article.

6

Fasten: a toolkit for streaming operations on fastq files.

Katz LS, Phan J, den Bakker HC. Katz LS, et al. Among authors: den bakker hc. J Open Source Softw. 2024;9(94):6030. doi: 10.21105/joss.06030. J Open Source Softw. 2024. PMID: 39234029 Free PMC article. No abstract available.

7

Analysis of Microbial Composition of Edible Insect Products Available for Human Consumption within the United States Using Traditional Microbiological Methods and Whole Genome Sequencing.

Pal A, Mann A, den Bakker HC. Pal A, et al. Among authors: den bakker hc. J Food Prot. 2024 Jun;87(6):100277. doi: 10.1016/j.jfp.2024.100277. Epub 2024 Apr 12. J Food Prot. 2024. PMID: 38615992 Free article.

8

Characterizing the gut microbiome of broilers raised under conventional and no antibiotics ever practices.

Novoa Rama E, Bailey M, Kumar S, Leone C, den Bakker HC, Thippareddi H, Singh M. Novoa Rama E, et al. Among authors: den bakker hc. Poult Sci. 2023 Aug;102(8):102832. doi: 10.1016/j.psj.2023.102832. Epub 2023 Jun 3. Poult Sci. 2023. PMID: 37343348 Free PMC article.

9

Phenotypic characterization and analysis of complete genomes of two distinct strains of the proposed species "L. swaminathanii".

Hudson LK, Chaggar HK, Schamp CN, Claxton ML, Bryan DW, Peters TL, Song Y, Carlin CR, den Bakker HC, Denes TG. Hudson LK, et al. Among authors: den bakker hc. Sci Rep. 2022 Jun 1;12(1):9137. doi: 10.1038/s41598-022-13119-y. Sci Rep. 2022. PMID: 35650389 Free PMC article.

10

SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data.

Griswold T, Kapsak C, Chen JC, den Bakker HC, Williams G, Kelley A, Vidyaprakash E, Katz LS. Griswold T, et al. Among authors: den bakker hc. J Open Source Softw. 2021 Apr 16;6(60):10.21105/joss.02334. doi: 10.21105/joss.02334. J Open Source Softw. 2021. PMID: 35360664 Free PMC article.

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