Zhao P - Search Results

1

Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences.

Chen Z, Zhao P, Li F, Wang Y, Smith AI, Webb GI, Akutsu T, Baggag A, Bensmail H, Song J. Chen Z, et al. Among authors: zhao p. Brief Bioinform. 2020 Sep 25;21(5):1676-1696. doi: 10.1093/bib/bbz112. Brief Bioinform. 2020. PMID: 31714956 Review.

2

iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences.

Chen Z, Zhao P, Li F, Leier A, Marquez-Lago TT, Wang Y, Webb GI, Smith AI, Daly RJ, Chou KC, Song J. Chen Z, et al. Among authors: zhao p. Bioinformatics. 2018 Jul 15;34(14):2499-2502. doi: 10.1093/bioinformatics/bty140. Bioinformatics. 2018. PMID: 29528364 Free PMC article.

3

iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.

Chen Z, Zhao P, Li F, Marquez-Lago TT, Leier A, Revote J, Zhu Y, Powell DR, Akutsu T, Webb GI, Chou KC, Smith AI, Daly RJ, Li J, Song J. Chen Z, et al. Among authors: zhao p. Brief Bioinform. 2020 May 21;21(3):1047-1057. doi: 10.1093/bib/bbz041. Brief Bioinform. 2020. PMID: 31067315

4

PROSPECT: A web server for predicting protein histidine phosphorylation sites.

Chen Z, Zhao P, Li F, Leier A, Marquez-Lago TT, Webb GI, Baggag A, Bensmail H, Song J. Chen Z, et al. Among authors: zhao p. J Bioinform Comput Biol. 2020 Aug;18(4):2050018. doi: 10.1142/S0219720020500183. Epub 2020 Jun 5. J Bioinform Comput Biol. 2020. PMID: 32501138

5

iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization.

Chen Z, Zhao P, Li C, Li F, Xiang D, Chen YZ, Akutsu T, Daly RJ, Webb GI, Zhao Q, Kurgan L, Song J. Chen Z, et al. Among authors: zhao p, zhao q. Nucleic Acids Res. 2021 Jun 4;49(10):e60. doi: 10.1093/nar/gkab122. Nucleic Acids Res. 2021. PMID: 33660783 Free PMC article.

6

iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets.

Chen Z, Liu X, Zhao P, Li C, Wang Y, Li F, Akutsu T, Bain C, Gasser RB, Li J, Yang Z, Gao X, Kurgan L, Song J. Chen Z, et al. Among authors: zhao p. Nucleic Acids Res. 2022 Jul 5;50(W1):W434-W447. doi: 10.1093/nar/gkac351. Nucleic Acids Res. 2022. PMID: 35524557 Free PMC article.

7

ResNetKhib: a novel cell type-specific tool for predicting lysine 2-hydroxyisobutylation sites via transfer learning.

Jia X, Zhao P, Li F, Qin Z, Ren H, Li J, Miao C, Zhao Q, Akutsu T, Dou G, Chen Z, Song J. Jia X, et al. Among authors: zhao p, zhao q. Brief Bioinform. 2023 Mar 19;24(2):bbad063. doi: 10.1093/bib/bbad063. Brief Bioinform. 2023. PMID: 36880172 Free PMC article.

8

SLAM: Structure-aware lysine β-hydroxybutyrylation prediction with protein language model.

Qin Z, Liu H, Zhao P, Wang K, Ren H, Miao C, Li J, Chen YZ, Chen Z. Qin Z, et al. Among authors: zhao p. Int J Biol Macromol. 2024 Sep 16;280(Pt 1):135741. doi: 10.1016/j.ijbiomac.2024.135741. Online ahead of print. Int J Biol Macromol. 2024. PMID: 39293623

9

Current computational tools for protein lysine acylation site prediction.

Qin Z, Ren H, Zhao P, Wang K, Liu H, Miao C, Du Y, Li J, Wu L, Chen Z. Qin Z, et al. Among authors: zhao p. Brief Bioinform. 2024 Sep 23;25(6):bbae469. doi: 10.1093/bib/bbae469. Brief Bioinform. 2024. PMID: 39316944

10

Research Progress of PPR Proteins in RNA Editing, Stress Response, Plant Growth and Development.

Qin T, Zhao P, Sun J, Zhao Y, Zhang Y, Yang Q, Wang W, Chen Z, Mai T, Zou Y, Liu G, Hao W. Qin T, et al. Among authors: zhao y, zhao p. Front Genet. 2021 Oct 18;12:765580. doi: 10.3389/fgene.2021.765580. eCollection 2021. Front Genet. 2021. PMID: 34733319 Free PMC article. Review.

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