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Enabling reusability of plant phenomic datasets with MIAPPE 1.1.
Papoutsoglou EA, Faria D, Arend D, Arnaud E, Athanasiadis IN, Chaves I, Coppens F, Cornut G, Costa BV, Ćwiek-Kupczyńska H, Droesbeke B, Finkers R, Gruden K, Junker A, King GJ, Krajewski P, Lange M, Laporte MA, Michotey C, Oppermann M, Ostler R, Poorter H, Ramı Rez-Gonzalez R, Ramšak Ž, Reif JC, Rocca-Serra P, Sansone SA, Scholz U, Tardieu F, Uauy C, Usadel B, Visser RGF, Weise S, Kersey PJ, Miguel CM, Adam-Blondon AF, Pommier C. Papoutsoglou EA, et al. Among authors: kersey pj. New Phytol. 2020 Jul;227(1):260-273. doi: 10.1111/nph.16544. Epub 2020 Apr 25. New Phytol. 2020. PMID: 32171029 Free PMC article.
Towards recommendations for metadata and data handling in plant phenotyping.
Krajewski P, Chen D, Ćwiek H, van Dijk AD, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S. Krajewski P, et al. J Exp Bot. 2015 Sep;66(18):5417-27. doi: 10.1093/jxb/erv271. Epub 2015 Jun 4. J Exp Bot. 2015. PMID: 26044092
Measures for interoperability of phenotypic data: minimum information requirements and formatting.
Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D, Cornut G, Fiorani F, Frohmberg W, Junker A, Klukas C, Lange M, Mazurek C, Nafissi A, Neveu P, van Oeveren J, Pommier C, Poorter H, Rocca-Serra P, Sansone SA, Scholz U, van Schriek M, Seren Ü, Usadel B, Weise S, Kersey P, Krajewski P. Ćwiek-Kupczyńska H, et al. Plant Methods. 2016 Nov 9;12:44. doi: 10.1186/s13007-016-0144-4. eCollection 2016. Plant Methods. 2016. PMID: 27843484 Free PMC article.
transPLANT Resources for Triticeae Genomic Data.
Spannagl M, Alaux M, Lange M, Bolser DM, Bader KC, Letellier T, Kimmel E, Flores R, Pommier C, Kerhornou A, Walts B, Nussbaumer T, Grabmuller C, Chen J, Colmsee C, Beier S, Mascher M, Schmutzer T, Arend D, Thanki A, Ramirez-Gonzalez R, Ayling M, Ayling S, Caccamo M, Mayer KF, Scholz U, Steinbach D, Quesneville H, Kersey PJ. Spannagl M, et al. Among authors: kersey pj. Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.06.0038. Plant Genome. 2016. PMID: 27898761 Free article. Review.
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations.
Clavijo BJ, Venturini L, Schudoma C, Accinelli GG, Kaithakottil G, Wright J, Borrill P, Kettleborough G, Heavens D, Chapman H, Lipscombe J, Barker T, Lu FH, McKenzie N, Raats D, Ramirez-Gonzalez RH, Coince A, Peel N, Percival-Alwyn L, Duncan O, Trösch J, Yu G, Bolser DM, Namaati G, Kerhornou A, Spannagl M, Gundlach H, Haberer G, Davey RP, Fosker C, Palma FD, Phillips AL, Millar AH, Kersey PJ, Uauy C, Krasileva KV, Swarbreck D, Bevan MW, Clark MD. Clavijo BJ, et al. Among authors: kersey pj. Genome Res. 2017 May;27(5):885-896. doi: 10.1101/gr.217117.116. Genome Res. 2017. PMID: 28420692 Free PMC article.
Mobilizing Crop Biodiversity.
McCouch S, Navabi ZK, Abberton M, Anglin NL, Barbieri RL, Baum M, Bett K, Booker H, Brown GL, Bryan GJ, Cattivelli L, Charest D, Eversole K, Freitas M, Ghamkhar K, Grattapaglia D, Henry R, Valadares Inglis MC, Islam T, Kehel Z, Kersey PJ, King GJ, Kresovich S, Marden E, Mayes S, Ndjiondjop MN, Nguyen HT, Paiva SR, Papa R, Phillips PWB, Rasheed A, Richards C, Rouard M, Amstalden Sampaio MJ, Scholz U, Shaw PD, Sherman B, Staton SE, Stein N, Svensson J, Tester M, Montenegro Valls JF, Varshney R, Visscher S, von Wettberg E, Waugh R, Wenzl P, Rieseberg LH. McCouch S, et al. Among authors: kersey pj. Mol Plant. 2020 Oct 5;13(10):1341-1344. doi: 10.1016/j.molp.2020.08.011. Epub 2020 Aug 21. Mol Plant. 2020. PMID: 32835887 Free article. No abstract available.
Plant genome sequences: past, present, future.
Kersey PJ. Kersey PJ. Curr Opin Plant Biol. 2019 Apr;48:1-8. doi: 10.1016/j.pbi.2018.11.001. Epub 2018 Dec 19. Curr Opin Plant Biol. 2019. PMID: 30579050 Review.
Green plant genomes: What we know in an era of rapidly expanding opportunities.
Kress WJ, Soltis DE, Kersey PJ, Wegrzyn JL, Leebens-Mack JH, Gostel MR, Liu X, Soltis PS. Kress WJ, et al. Among authors: kersey pj. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4):e2115640118. doi: 10.1073/pnas.2115640118. Proc Natl Acad Sci U S A. 2022. PMID: 35042803 Free PMC article.
111 results