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RNA helicases DDX5 and DDX17 dynamically orchestrate transcription, miRNA, and splicing programs in cell differentiation.
Dardenne E, Polay Espinoza M, Fattet L, Germann S, Lambert MP, Neil H, Zonta E, Mortada H, Gratadou L, Deygas M, Chakrama FZ, Samaan S, Desmet FO, Tranchevent LC, Dutertre M, Rimokh R, Bourgeois CF, Auboeuf D. Dardenne E, et al. Among authors: bourgeois cf. Cell Rep. 2014 Jun 26;7(6):1900-13. doi: 10.1016/j.celrep.2014.05.010. Epub 2014 Jun 6. Cell Rep. 2014. PMID: 24910439 Free article.
Identification of protein features encoded by alternative exons using Exon Ontology.
Tranchevent LC, Aubé F, Dulaurier L, Benoit-Pilven C, Rey A, Poret A, Chautard E, Mortada H, Desmet FO, Chakrama FZ, Moreno-Garcia MA, Goillot E, Janczarski S, Mortreux F, Bourgeois CF, Auboeuf D. Tranchevent LC, et al. Among authors: bourgeois cf. Genome Res. 2017 Jun;27(6):1087-1097. doi: 10.1101/gr.212696.116. Epub 2017 Apr 18. Genome Res. 2017. PMID: 28420690 Free PMC article.
The RNA helicase DDX5 is a reprogramming roadblock.
Bourgeois CF, Auboeuf D. Bourgeois CF, et al. Stem Cell Investig. 2017 Sep 27;4:79. doi: 10.21037/sci.2017.09.04. eCollection 2017. Stem Cell Investig. 2017. PMID: 29057251 Free PMC article. No abstract available.
Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data.
Benoit-Pilven C, Marchet C, Chautard E, Lima L, Lambert MP, Sacomoto G, Rey A, Cologne A, Terrone S, Dulaurier L, Claude JB, Bourgeois CF, Auboeuf D, Lacroix V. Benoit-Pilven C, et al. Among authors: bourgeois cf. Sci Rep. 2018 Mar 9;8(1):4307. doi: 10.1038/s41598-018-21770-7. Sci Rep. 2018. PMID: 29523794 Free PMC article.
Interplay between coding and exonic splicing regulatory sequences.
Fontrodona N, Aubé F, Claude JB, Polvèche H, Lemaire S, Tranchevent LC, Modolo L, Mortreux F, Bourgeois CF, Auboeuf D. Fontrodona N, et al. Among authors: bourgeois cf. Genome Res. 2019 May;29(5):711-722. doi: 10.1101/gr.241315.118. Epub 2019 Apr 8. Genome Res. 2019. PMID: 30962178 Free PMC article.
A genome-wide screen identifies IRF2 as a key regulator of caspase-4 in human cells.
Benaoudia S, Martin A, Puig Gamez M, Gay G, Lagrange B, Cornut M, Krasnykov K, Claude JB, Bourgeois CF, Hughes S, Gillet B, Allatif O, Corbin A, Ricci R, Henry T. Benaoudia S, et al. Among authors: bourgeois cf. EMBO Rep. 2019 Sep;20(9):e48235. doi: 10.15252/embr.201948235. Epub 2019 Jul 29. EMBO Rep. 2019. PMID: 31353801 Free PMC article.
51 results