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Intragenic recruitment of NF-κB drives splicing modifications upon activation by the oncogene Tax of HTLV-1.
Nat Commun. 2020 Jun 16;11(1):3045. doi: 10.1038/s41467-020-16853-x.
Nat Commun. 2020.
PMID: 32546717
Free PMC article.
Characterizing the interplay between gene nucleotide composition bias and splicing.
Lemaire S, Fontrodona N, Aubé F, Claude JB, Polvèche H, Modolo L, Bourgeois CF, Mortreux F, Auboeuf D.
Lemaire S, et al. Among authors: fontrodona n.
Genome Biol. 2019 Nov 29;20(1):259. doi: 10.1186/s13059-019-1869-y.
Genome Biol. 2019.
PMID: 31783898
Free PMC article.
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Interplay between coding and exonic splicing regulatory sequences.
Fontrodona N, Aubé F, Claude JB, Polvèche H, Lemaire S, Tranchevent LC, Modolo L, Mortreux F, Bourgeois CF, Auboeuf D.
Fontrodona N, et al.
Genome Res. 2019 May;29(5):711-722. doi: 10.1101/gr.241315.118. Epub 2019 Apr 8.
Genome Res. 2019.
PMID: 30962178
Free PMC article.
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RNA helicase-dependent gene looping impacts messenger RNA processing.
Terrone S, Valat J, Fontrodona N, Giraud G, Claude JB, Combe E, Lapendry A, Polvèche H, Ameur LB, Duvermy A, Modolo L, Bernard P, Mortreux F, Auboeuf D, Bourgeois CF.
Terrone S, et al. Among authors: fontrodona n.
Nucleic Acids Res. 2022 Sep 9;50(16):9226-9246. doi: 10.1093/nar/gkac717.
Nucleic Acids Res. 2022.
PMID: 36039747
Free PMC article.
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Metabolism-dependent secondary effect of anti-MAPK cancer therapy on DNA repair.
Aubé F, Fontrodona N, Guiguettaz L, Vallin E, Fabbri L, Lapendry A, Vagner S, Ricci EP, Auboeuf D.
Aubé F, et al. Among authors: fontrodona n.
NAR Cancer. 2024 Apr 30;6(2):zcae019. doi: 10.1093/narcan/zcae019. eCollection 2024 Jun.
NAR Cancer. 2024.
PMID: 38690580
Free PMC article.
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Translation-dependent and -independent mRNA decay occur through mutually exclusive pathways defined by ribosome density during T cell activation.
Mercier BC, Labaronne E, Cluet D, Guiguettaz L, Fontrodona N, Bicknell A, Corbin A, Wencker M, Aube F, Modolo L, Jouravleva K, Auboeuf D, Moore MJ, Ricci EP.
Mercier BC, et al. Among authors: fontrodona n.
Genome Res. 2024 Apr 25;34(3):394-409. doi: 10.1101/gr.277863.123.
Genome Res. 2024.
PMID: 38508694
Free PMC article.
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Gene-to-gene coordinated regulation of transcription and alternative splicing by 3D chromatin remodeling upon NF-κB activation.
Marie P, Bazire M, Ladet J, Ameur LB, Chahar S, Fontrodona N, Sexton T, Auboeuf D, Bourgeois CF, Mortreux F.
Marie P, et al. Among authors: fontrodona n.
Nucleic Acids Res. 2024 Feb 28;52(4):1527-1543. doi: 10.1093/nar/gkae015.
Nucleic Acids Res. 2024.
PMID: 38272542
Free PMC article.
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SplicingLore: a web resource for studying the regulation of cassette exons by human splicing factors.
Polvèche H, Valat J, Fontrodona N, Lapendry A, Clerc V, Janczarski S, Mortreux F, Auboeuf D, Bourgeois CF.
Polvèche H, et al. Among authors: fontrodona n.
Database (Oxford). 2023 Dec 21;2023:baad091. doi: 10.1093/database/baad091.
Database (Oxford). 2023.
PMID: 38128543
Free PMC article.
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