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A clinician's guide to microbiome analysis.
Claesson MJ, Clooney AG, O'Toole PW. Claesson MJ, et al. Nat Rev Gastroenterol Hepatol. 2017 Oct;14(10):585-595. doi: 10.1038/nrgastro.2017.97. Epub 2017 Aug 9. Nat Rev Gastroenterol Hepatol. 2017. PMID: 28790452 Review.
Making Sense of … the Microbiome in Psychiatry.
Bastiaanssen TFS, Cowan CSM, Claesson MJ, Dinan TG, Cryan JF. Bastiaanssen TFS, et al. Among authors: claesson mj. Int J Neuropsychopharmacol. 2019 Jan 1;22(1):37-52. doi: 10.1093/ijnp/pyy067. Int J Neuropsychopharmacol. 2019. PMID: 30099552 Free PMC article. Review.
Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease.
Ryan FJ, Ahern AM, Fitzgerald RS, Laserna-Mendieta EJ, Power EM, Clooney AG, O'Donoghue KW, McMurdie PJ, Iwai S, Crits-Christoph A, Sheehan D, Moran C, Flemer B, Zomer AL, Fanning A, O'Callaghan J, Walton J, Temko A, Stack W, Jackson L, Joyce SA, Melgar S, DeSantis TZ, Bell JT, Shanahan F, Claesson MJ. Ryan FJ, et al. Among authors: claesson mj. Nat Commun. 2020 Mar 23;11(1):1512. doi: 10.1038/s41467-020-15342-5. Nat Commun. 2020. PMID: 32251296 Free PMC article.
Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study.
Clooney AG, Eckenberger J, Laserna-Mendieta E, Sexton KA, Bernstein MT, Vagianos K, Sargent M, Ryan FJ, Moran C, Sheehan D, Sleator RD, Targownik LE, Bernstein CN, Shanahan F, Claesson MJ. Clooney AG, et al. Among authors: claesson mj. Gut. 2021 Mar;70(3):499-510. doi: 10.1136/gutjnl-2020-321106. Epub 2020 Jun 14. Gut. 2021. PMID: 32536605 Free PMC article.
Machine learning approaches in microbiome research: challenges and best practices.
Papoutsoglou G, Tarazona S, Lopes MB, Klammsteiner T, Ibrahimi E, Eckenberger J, Novielli P, Tonda A, Simeon A, Shigdel R, Béreux S, Vitali G, Tangaro S, Lahti L, Temko A, Claesson MJ, Berland M. Papoutsoglou G, et al. Among authors: claesson mj. Front Microbiol. 2023 Sep 22;14:1261889. doi: 10.3389/fmicb.2023.1261889. eCollection 2023. Front Microbiol. 2023. PMID: 37808286 Free PMC article. Review.
Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action.
D'Elia D, Truu J, Lahti L, Berland M, Papoutsoglou G, Ceci M, Zomer A, Lopes MB, Ibrahimi E, Gruca A, Nechyporenko A, Frohme M, Klammsteiner T, Pau ECS, Marcos-Zambrano LJ, Hron K, Pio G, Simeon A, Suharoschi R, Moreno-Indias I, Temko A, Nedyalkova M, Apostol ES, Truică CO, Shigdel R, Telalović JH, Bongcam-Rudloff E, Przymus P, Jordamović NB, Falquet L, Tarazona S, Sampri A, Isola G, Pérez-Serrano D, Trajkovik V, Klucar L, Loncar-Turukalo T, Havulinna AS, Jansen C, Bertelsen RJ, Claesson MJ. D'Elia D, et al. Among authors: claesson mj. Front Microbiol. 2023 Sep 25;14:1257002. doi: 10.3389/fmicb.2023.1257002. eCollection 2023. Front Microbiol. 2023. PMID: 37808321 Free PMC article.
Gut microbiota composition correlates with diet and health in the elderly.
Claesson MJ, Jeffery IB, Conde S, Power SE, O'Connor EM, Cusack S, Harris HM, Coakley M, Lakshminarayanan B, O'Sullivan O, Fitzgerald GF, Deane J, O'Connor M, Harnedy N, O'Connor K, O'Mahony D, van Sinderen D, Wallace M, Brennan L, Stanton C, Marchesi JR, Fitzgerald AP, Shanahan F, Hill C, Ross RP, O'Toole PW. Claesson MJ, et al. Nature. 2012 Aug 9;488(7410):178-84. doi: 10.1038/nature11319. Nature. 2012. PMID: 22797518
Categorization of the gut microbiota: enterotypes or gradients?
Jeffery IB, Claesson MJ, O'Toole PW, Shanahan F. Jeffery IB, et al. Among authors: claesson mj. Nat Rev Microbiol. 2012 Sep;10(9):591-2. doi: 10.1038/nrmicro2859. Nat Rev Microbiol. 2012. PMID: 23066529 No abstract available.
91 results