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Inhibition of the integrated stress response by viral proteins that block p-eIF2-eIF2B association.
Rabouw HH, Visser LJ, Passchier TC, Langereis MA, Liu F, Giansanti P, van Vliet ALW, Dekker JG, van der Grein SG, Saucedo JG, Anand AA, Trellet ME, Bonvin AMJJ, Walter P, Heck AJR, de Groot RJ, van Kuppeveld FJM. Rabouw HH, et al. Among authors: bonvin amjj. Nat Microbiol. 2020 Nov;5(11):1361-1373. doi: 10.1038/s41564-020-0759-0. Epub 2020 Jul 20. Nat Microbiol. 2020. PMID: 32690955
Defining the limits of homology modeling in information-driven protein docking.
Rodrigues JP, Melquiond AS, Karaca E, Trellet M, van Dijk M, van Zundert GC, Schmitz C, de Vries SJ, Bordogna A, Bonati L, Kastritis PL, Bonvin AM. Rodrigues JP, et al. Proteins. 2013 Dec;81(12):2119-28. doi: 10.1002/prot.24382. Epub 2013 Oct 17. Proteins. 2013. PMID: 23913867 Free article.
Extended O-GlcNAc on HLA Class-I-Bound Peptides.
Marino F, Bern M, Mommen GPM, Leney AC, van Gaans-van den Brink JAM, Bonvin AMJJ, Becker C, van Els CACM, Heck AJR. Marino F, et al. Among authors: bonvin amjj. J Am Chem Soc. 2015 Sep 2;137(34):10922-10925. doi: 10.1021/jacs.5b06586. Epub 2015 Aug 19. J Am Chem Soc. 2015. PMID: 26280087 Free PMC article.
SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots.
Moreira IS, Koukos PI, Melo R, Almeida JG, Preto AJ, Schaarschmidt J, Trellet M, Gümüş ZH, Costa J, Bonvin AMJJ. Moreira IS, et al. Among authors: bonvin amjj. Sci Rep. 2017 Aug 14;7(1):8007. doi: 10.1038/s41598-017-08321-2. Sci Rep. 2017. PMID: 28808256 Free PMC article.
Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2.
Kurkcuoglu Z, Koukos PI, Citro N, Trellet ME, Rodrigues JPGLM, Moreira IS, Roel-Touris J, Melquiond ASJ, Geng C, Schaarschmidt J, Xue LC, Vangone A, Bonvin AMJJ. Kurkcuoglu Z, et al. Among authors: bonvin amjj. J Comput Aided Mol Des. 2018 Jan;32(1):175-185. doi: 10.1007/s10822-017-0049-y. Epub 2017 Aug 22. J Comput Aided Mol Des. 2018. PMID: 28831657 Free PMC article.
pdb-tools: a swiss army knife for molecular structures.
Rodrigues JPGLM, Teixeira JMC, Trellet M, Bonvin AMJJ. Rodrigues JPGLM, et al. Among authors: bonvin amjj. F1000Res. 2018 Dec 20;7:1961. doi: 10.12688/f1000research.17456.1. eCollection 2018. F1000Res. 2018. PMID: 30705752 Free PMC article.
268 results