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Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals.
Doddapaneni H, Cregeen SJ, Sucgang R, Meng Q, Qin X, Avadhanula V, Chao H, Menon V, Nicholson E, Henke D, Piedra FA, Rajan A, Momin Z, Kottapalli K, Hoffman KL, Sedlazeck FJ, Metcalf G, Piedra PA, Muzny DM, Petrosino JF, Gibbs RA. Doddapaneni H, et al. Among authors: rajan a. bioRxiv [Preprint]. 2020 Jul 27:2020.07.27.223495. doi: 10.1101/2020.07.27.223495. bioRxiv. 2020. Update in: PLoS One. 2021 Aug 25;16(8):e0244468. doi: 10.1371/journal.pone.0244468. PMID: 32766579 Free PMC article. Updated. Preprint.
Oligonucleotide Capture Sequencing of the SARS-CoV-2 Genome and Subgenomic Fragments from COVID-19 Individuals.
Doddapaneni H, Cregeen SJ, Sucgang R, Meng Q, Qin X, Avadhanula V, Chao H, Menon V, Nicholson E, Henke D, Piedra FA, Rajan A, Momin Z, Kottapalli K, Hoffman KL, Sedlazeck FJ, Metcalf G, Piedra PA, Muzny DM, Petrosino JF, Gibbs RA. Doddapaneni H, et al. Among authors: rajan a. bioRxiv [Preprint]. 2020 Dec 11:2020.12.11.421057. doi: 10.1101/2020.12.11.421057. bioRxiv. 2020. Update in: PLoS One. 2021 Aug 25;16(8):e0244468. doi: 10.1371/journal.pone.0244468. PMID: 33330863 Free PMC article. Updated. Preprint.
The human nose organoid respiratory virus model: an ex-vivo human challenge model to study RSV and SARS-CoV-2 pathogenesis and evaluate therapeutics.
Rajan A, Weaver AM, Aloisio GM, Jelinski J, Johnson HL, Venable SF, McBride T, Aideyan L, Piedra FA, Ye X, Melicoff-Portillo E, Yerramilli MRK, Zeng XL, Mancini MA, Stossi F, Maresso AW, Kotkar SA, Estes MK, Blutt S, Avadhanula V, Piedra PA. Rajan A, et al. bioRxiv [Preprint]. 2021 Jul 28:2021.07.28.453844. doi: 10.1101/2021.07.28.453844. bioRxiv. 2021. Update in: mBio. 2022 Feb 15;13(1):e0351121. doi: 10.1128/mbio.03511-21. PMID: 34341793 Free PMC article. Updated. Preprint.
Oligonucleotide capture sequencing of the SARS-CoV-2 genome and subgenomic fragments from COVID-19 individuals.
Doddapaneni H, Cregeen SJ, Sucgang R, Meng Q, Qin X, Avadhanula V, Chao H, Menon V, Nicholson E, Henke D, Piedra FA, Rajan A, Momin Z, Kottapalli K, Hoffman KL, Sedlazeck FJ, Metcalf G, Piedra PA, Muzny DM, Petrosino JF, Gibbs RA. Doddapaneni H, et al. Among authors: rajan a. PLoS One. 2021 Aug 25;16(8):e0244468. doi: 10.1371/journal.pone.0244468. eCollection 2021. PLoS One. 2021. PMID: 34432798 Free PMC article.
Drivers of transcriptional variance in human intestinal epithelial organoids.
Criss ZK 2nd, Bhasin N, Di Rienzi SC, Rajan A, Deans-Fielder K, Swaminathan G, Kamyabi N, Zeng XL, Doddapaneni H, Menon VK, Chakravarti D, Estrella C, Yu X, Patil K, Petrosino JF, Fleet JC, Verzi MP, Christakos S, Helmrath MA, Arimura S, DePinho RA, Britton RA, Maresso AW, Grande-Allen KJ, Blutt SE, Crawford SE, Estes MK, Ramani S, Shroyer NF. Criss ZK 2nd, et al. Among authors: rajan a. Physiol Genomics. 2021 Nov 1;53(11):486-508. doi: 10.1152/physiolgenomics.00061.2021. Epub 2021 Oct 6. Physiol Genomics. 2021. PMID: 34612061 Free PMC article.
Serum IgG anti-SARS-CoV-2 Binding Antibody Level Is Strongly Associated With IgA and Functional Antibody Levels in Adults Infected With SARS-CoV-2.
Ye X, Angelo LS, Nicholson EG, Iwuchukwu OP, Cabral de Rezende W, Rajan A, Aideyan LO, McBride TJ, Bond N, Santarcangelo P, Rayford YJ, Ferlic-Stark L, Fragoso S, Momin Z, Liu H, Truong K, Lopez B, Conner ME, Rice AP, Kimata JT, Avadhanula V, Piedra PA. Ye X, et al. Among authors: rajan a. Front Immunol. 2021 Oct 8;12:693462. doi: 10.3389/fimmu.2021.693462. eCollection 2021. Front Immunol. 2021. PMID: 34691016 Free PMC article.
The Human Nose Organoid Respiratory Virus Model: an Ex Vivo Human Challenge Model To Study Respiratory Syncytial Virus (RSV) and Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Pathogenesis and Evaluate Therapeutics.
Rajan A, Weaver AM, Aloisio GM, Jelinski J, Johnson HL, Venable SF, McBride T, Aideyan L, Piedra FA, Ye X, Melicoff-Portillo E, Yerramilli MRK, Zeng XL, Mancini MA, Stossi F, Maresso AW, Kotkar SA, Estes MK, Blutt S, Avadhanula V, Piedra PA. Rajan A, et al. mBio. 2021 Feb 22;13(1):e0351121. doi: 10.1128/mbio.03511-21. Epub 2022 Feb 15. mBio. 2021. PMID: 35164569 Free PMC article.
Multiple Respiratory Syncytial Virus (RSV) Strains Infecting HEp-2 and A549 Cells Reveal Cell Line-Dependent Differences in Resistance to RSV Infection.
Rajan A, Piedra FA, Aideyan L, McBride T, Robertson M, Johnson HL, Aloisio GM, Henke D, Coarfa C, Stossi F, Menon VK, Doddapaneni H, Muzny DM, Javornik Cregeen SJ, Hoffman KL, Petrosino J, Gibbs RA, Avadhanula V, Piedra PA. Rajan A, et al. J Virol. 2022 Apr 13;96(7):e0190421. doi: 10.1128/jvi.01904-21. Epub 2022 Mar 14. J Virol. 2022. PMID: 35285685 Free PMC article.
Modeling nonsegmented negative-strand RNA virus (NNSV) transcription with ejective polymerase collisions and biased diffusion.
Piedra FA, Henke D, Rajan A, Muzny DM, Doddapaneni H, Menon VK, Hoffman KL, Ross MC, Javornik Cregeen SJ, Metcalf G, Gibbs RA, Petrosino JF, Avadhanula V, Piedra PA. Piedra FA, et al. Among authors: rajan a. Front Mol Biosci. 2023 Jan 9;9:1095193. doi: 10.3389/fmolb.2022.1095193. eCollection 2022. Front Mol Biosci. 2023. PMID: 36699700 Free PMC article.
Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load.
Avadhanula V, Creighton CJ, Ferlic-Stark L, Sucgang R, Zhang Y, Nagaraj D, Nicholson EG, Rajan A, Menon VK, Doddapaneni H, Muzny DM, Metcalf G, Cregeen SJJ, Hoffman KL, Gibbs RA, Petrosino J, Piedra PA. Avadhanula V, et al. Among authors: rajan a. bioRxiv [Preprint]. 2023 May 25:2023.05.24.542181. doi: 10.1101/2023.05.24.542181. bioRxiv. 2023. PMID: 37292999 Free PMC article. Preprint.
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