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IDseq-An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring.
Gigascience. 2020 Oct 15;9(10):giaa111. doi: 10.1093/gigascience/giaa111.
Gigascience. 2020.
PMID: 33057676
Free PMC article.
Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline.
Lu D, Kalantar KL, Chu VT, Glascock AL, Guerrero ES, Bernick N, Butcher X, Ewing K, Fahsbender E, Holmes O, Hoops E, Jones AE, Lim R, McCanny S, Reynoso L, Rosario K, Tang J, Valenzuela O, Mourani PM, Pickering AJ, Raphenya AR, Alcock BP, McArthur AG, Langelier CR.
Lu D, et al.
bioRxiv [Preprint]. 2024 Apr 18:2024.04.12.589250. doi: 10.1101/2024.04.12.589250.
bioRxiv. 2024.
PMID: 38645206
Free PMC article.
Preprint.
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Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID pipeline.
Langelier C, Lu D, Kalantar K, Chu V, Glascock A, Guerrero E, Bernick N, Butcher X, Ewing K, Fahsbender E, Holmes O, Hoops E, Jones A, Lim R, McCanny S, Reynoso L, Rosario K, Tang J, Valenzuela O, Mourani P, Pickering A, Raphenya A, Alcock B, McArthur A.
Langelier C, et al.
Res Sq [Preprint]. 2024 May 2:rs.3.rs-4271356. doi: 10.21203/rs.3.rs-4271356/v1.
Res Sq. 2024.
PMID: 38746293
Free PMC article.
Preprint.
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