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Subtraction-free and bisulfite-free specific sequencing of 5-methylcytosine and its oxidized derivatives at base resolution.
Nat Commun. 2021 Jan 27;12(1):618. doi: 10.1038/s41467-021-20920-2.
Nat Commun. 2021.
PMID: 33504799
Free PMC article.
Bisulfite-free and base-resolution analysis of 5-methylcytidine and 5-hydroxymethylcytidine in RNA with peroxotungstate.
Yuan F, Bi Y, Siejka-Zielinska P, Zhou YL, Zhang XX, Song CX.
Yuan F, et al. Among authors: siejka zielinska p.
Chem Commun (Camb). 2019 Feb 19;55(16):2328-2331. doi: 10.1039/c9cc00274j.
Chem Commun (Camb). 2019.
PMID: 30723849
Free PMC article.
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Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution.
Liu Y, Siejka-Zielińska P, Velikova G, Bi Y, Yuan F, Tomkova M, Bai C, Chen L, Schuster-Böckler B, Song CX.
Liu Y, et al. Among authors: siejka zielinska p.
Nat Biotechnol. 2019 Apr;37(4):424-429. doi: 10.1038/s41587-019-0041-2. Epub 2019 Feb 25.
Nat Biotechnol. 2019.
PMID: 30804537
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Accurate targeted long-read DNA methylation and hydroxymethylation sequencing with TAPS.
Liu Y, Cheng J, Siejka-Zielińska P, Weldon C, Roberts H, Lopopolo M, Magri A, D'Arienzo V, Harris JM, McKeating JA, Song CX.
Liu Y, et al. Among authors: siejka zielinska p.
Genome Biol. 2020 Mar 3;21(1):54. doi: 10.1186/s13059-020-01969-6.
Genome Biol. 2020.
PMID: 32127008
Free PMC article.
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Endonuclease enrichment TAPS for cost-effective genome-wide base-resolution DNA methylation detection.
Cheng J, Siejka-Zielińska P, Liu Y, Chandran A, Kriaucionis S, Song CX.
Cheng J, et al. Among authors: siejka zielinska p.
Nucleic Acids Res. 2021 Jul 21;49(13):e76. doi: 10.1093/nar/gkab291.
Nucleic Acids Res. 2021.
PMID: 33905495
Free PMC article.
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Cell-free DNA TAPS provides multimodal information for early cancer detection.
Siejka-Zielińska P, Cheng J, Jackson F, Liu Y, Soonawalla Z, Reddy S, Silva M, Puta L, McCain MV, Culver EL, Bekkali N, Schuster-Böckler B, Palamara PF, Mann D, Reeves H, Barnes E, Sivakumar S, Song CX.
Siejka-Zielińska P, et al.
Sci Adv. 2021 Sep 3;7(36):eabh0534. doi: 10.1126/sciadv.abh0534. Epub 2021 Sep 1.
Sci Adv. 2021.
PMID: 34516908
Free PMC article.
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Tumor monocyte content predicts immunochemotherapy outcomes in esophageal adenocarcinoma.
Carroll TM, Chadwick JA, Owen RP, White MJ, Kaplinsky J, Peneva I, Frangou A, Xie PF, Chang J, Roth A, Amess B, James SA, Rei M, Fuchs HS, McCann KJ, Omiyale AO, Jacobs BA, Lord SR, Norris-Bulpitt S, Dobbie ST, Griffiths L, Ramirez KA, Ricciardi T, Macri MJ, Ryan A, Venhaus RR, Van den Eynde BJ, Karydis I, Schuster-Böckler B, Middleton MR, Lu X; LUD2015-005 Project Team.
Carroll TM, et al.
Cancer Cell. 2023 Jul 10;41(7):1222-1241.e7. doi: 10.1016/j.ccell.2023.06.006.
Cancer Cell. 2023.
PMID: 37433281
Free article.
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Tracking in situ checkpoint inhibitor-bound target T cells in patients with checkpoint-induced colitis.
Gupta T, Antanaviciute A, Hyun-Jung Lee C, Ottakandathil Babu R, Aulicino A, Christoforidou Z, Siejka-Zielinska P, O'Brien-Ball C, Chen H, Fawkner-Corbett D, Geros AS, Bridges E, McGregor C, Cianci N, Fryer E, Alham NK, Jagielowicz M, Santos AM, Fellermeyer M, Davis SJ, Parikh K, Cheung V, Al-Hillawi L, Sasson S, Slevin S, Brain O; TIP Consortium; Fernandes RA, Koohy H, Simmons A.
Gupta T, et al. Among authors: siejka zielinska p.
Cancer Cell. 2024 May 13;42(5):797-814.e15. doi: 10.1016/j.ccell.2024.04.010.
Cancer Cell. 2024.
PMID: 38744246
Free article.
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