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SuRankCo: supervised ranking of contigs in de novo assemblies.
Kuhring M, Dabrowski PW, Piro VC, Nitsche A, Renard BY. Kuhring M, et al. Among authors: piro vc. BMC Bioinformatics. 2015 Jul 30;16:240. doi: 10.1186/s12859-015-0644-7. BMC Bioinformatics. 2015. PMID: 26224355 Free PMC article.
DUDes: a top-down taxonomic profiler for metagenomics.
Piro VC, Lindner MS, Renard BY. Piro VC, et al. Bioinformatics. 2016 Aug 1;32(15):2272-80. doi: 10.1093/bioinformatics/btw150. Epub 2016 Mar 24. Bioinformatics. 2016. PMID: 27153591
The gut microbiome, resistome, and mycobiome in preterm newborn infants and mouse pups: lack of lasting effects by antimicrobial therapy or probiotic prophylaxis.
Yuu EY, Bührer C, Eckmanns T, Fulde M, Herz M, Kurzai O, Lindstedt C, Panagiotou G, Piro VC, Radonic A, Renard BY, Reuss A, Siliceo SL, Thielemann N, Thürmer A, Vorst KV, Wieler LH, Haller S. Yuu EY, et al. Among authors: piro vc. Gut Pathog. 2024 May 12;16(1):27. doi: 10.1186/s13099-024-00616-w. Gut Pathog. 2024. PMID: 38735967 Free PMC article.
Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC. Sczyrba A, et al. Among authors: piro vc. Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2. Nat Methods. 2017. PMID: 28967888 Free PMC article.
13 results