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Towards FAIR protocols and workflows: the OpenPREDICT use case.
PeerJ Comput Sci. 2020 Sep 21;6:e281. doi: 10.7717/peerj-cs.281. eCollection 2020.
PeerJ Comput Sci. 2020.
PMID: 33816932
Free PMC article.
Relation extraction from DailyMed structured product labels by optimally combining crowd, experts and machines.
Shingjergji K, Celebi R, Scholtes J, Dumontier M.
Shingjergji K, et al. Among authors: celebi r.
J Biomed Inform. 2021 Oct;122:103902. doi: 10.1016/j.jbi.2021.103902. Epub 2021 Sep 1.
J Biomed Inform. 2021.
PMID: 34481057
Free article.
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In-silico Prediction of Synergistic Anti-Cancer Drug Combinations Using Multi-omics Data.
Celebi R, Bear Don't Walk O 4th, Movva R, Alpsoy S, Dumontier M.
Celebi R, et al.
Sci Rep. 2019 Jun 20;9(1):8949. doi: 10.1038/s41598-019-45236-6.
Sci Rep. 2019.
PMID: 31222109
Free PMC article.
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Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings.
Celebi R, Uyar H, Yasar E, Gumus O, Dikenelli O, Dumontier M.
Celebi R, et al.
BMC Bioinformatics. 2019 Dec 18;20(1):726. doi: 10.1186/s12859-019-3284-5.
BMC Bioinformatics. 2019.
PMID: 31852427
Free PMC article.
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Progress toward a universal biomedical data translator.
Fecho K, Thessen AE, Baranzini SE, Bizon C, Hadlock JJ, Huang S, Roper RT, Southall N, Ta C, Watkins PB, Williams MD, Xu H, Byrd W, Dančík V, Duby MP, Dumontier M, Glusman G, Harris NL, Hinderer EW, Hyde G, Johs A, Su AI, Qin G, Zhu Q; Biomedical Data Translator Consortium.
Fecho K, et al.
Clin Transl Sci. 2022 May 25;15(8):1838-47. doi: 10.1111/cts.13301. Online ahead of print.
Clin Transl Sci. 2022.
PMID: 35611543
Free PMC article.
Review.
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Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science.
Unni DR, Moxon SAT, Bada M, Brush M, Bruskiewich R, Caufield JH, Clemons PA, Dancik V, Dumontier M, Fecho K, Glusman G, Hadlock JJ, Harris NL, Joshi A, Putman T, Qin G, Ramsey SA, Shefchek KA, Solbrig H, Soman K, Thessen AE, Haendel MA, Bizon C, Mungall CJ; Biomedical Data Translator Consortium.
Unni DR, et al.
Clin Transl Sci. 2022 Aug;15(8):1848-1855. doi: 10.1111/cts.13302. Epub 2022 Jun 6.
Clin Transl Sci. 2022.
PMID: 36125173
Free PMC article.
Review.
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Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen.
Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M; AstraZeneca-Sanger Drug Combination DREAM Consortium; Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J.
Menden MP, et al.
Nat Commun. 2019 Jun 17;10(1):2674. doi: 10.1038/s41467-019-09799-2.
Nat Commun. 2019.
PMID: 31209238
Free PMC article.
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Artificial intelligence based data curation: enabling a patient-centric European health data space.
de Zegher I, Norak K, Steiger D, Müller H, Kalra D, Scheenstra B, Cina I, Shulz S, Uma K, Kalendralis P, Lotmam EM, Benedikt M, Dumontier M, Celebi R.
de Zegher I, et al. Among authors: celebi r.
Front Med (Lausanne). 2024 May 15;11:1365501. doi: 10.3389/fmed.2024.1365501. eCollection 2024.
Front Med (Lausanne). 2024.
PMID: 38813389
Free PMC article.
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