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Utilizing graph machine learning within drug discovery and development.
Brief Bioinform. 2021 Nov 5;22(6):bbab159. doi: 10.1093/bib/bbab159.
Brief Bioinform. 2021.
PMID: 34013350
Free PMC article.
RECOVER identifies synergistic drug combinations in vitro through sequential model optimization.
Bertin P, Rector-Brooks J, Sharma D, Gaudelet T, Anighoro A, Gross T, Martínez-Peña F, Tang EL, Suraj MS, Regep C, Hayter JBR, Korablyov M, Valiante N, van der Sloot A, Tyers M, Roberts CES, Bronstein MM, Lairson LL, Taylor-King JP, Bengio Y.
Bertin P, et al. Among authors: gaudelet t.
Cell Rep Methods. 2023 Oct 23;3(10):100599. doi: 10.1016/j.crmeth.2023.100599. Epub 2023 Oct 4.
Cell Rep Methods. 2023.
PMID: 37797618
Free PMC article.
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Higher-order molecular organization as a source of biological function.
Gaudelet T, Malod-Dognin N, Pržulj N.
Gaudelet T, et al.
Bioinformatics. 2018 Sep 1;34(17):i944-i953. doi: 10.1093/bioinformatics/bty570.
Bioinformatics. 2018.
PMID: 30423061
Free PMC article.
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Unveiling new disease, pathway, and gene associations via multi-scale neural network.
Gaudelet T, Malod-Dognin N, Sánchez-Valle J, Pancaldi V, Valencia A, Pržulj N.
Gaudelet T, et al.
PLoS One. 2020 Apr 6;15(4):e0231059. doi: 10.1371/journal.pone.0231059. eCollection 2020.
PLoS One. 2020.
PMID: 32251458
Free PMC article.
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Classification in biological networks with hypergraphlet kernels.
Lugo-Martinez J, Zeiberg D, Gaudelet T, Malod-Dognin N, Przulj N, Radivojac P.
Lugo-Martinez J, et al. Among authors: gaudelet t.
Bioinformatics. 2021 May 17;37(7):1000-1007. doi: 10.1093/bioinformatics/btaa768.
Bioinformatics. 2021.
PMID: 32886115
Free PMC article.
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Integrative Data Analytic Framework to Enhance Cancer Precision Medicine.
Gaudelet T, Malod-Dognin N, Pržulj N.
Gaudelet T, et al.
Netw Syst Med. 2021 Mar 18;4(1):60-73. doi: 10.1089/nsm.2020.0015. eCollection 2021.
Netw Syst Med. 2021.
PMID: 33796878
Free PMC article.
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