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Baseline human gut microbiota profile in healthy people and standard reporting template.
King CH, Desai H, Sylvetsky AC, LoTempio J, Ayanyan S, Carrie J, Crandall KA, Fochtman BC, Gasparyan L, Gulzar N, Howell P, Issa N, Krampis K, Mishra L, Morizono H, Pisegna JR, Rao S, Ren Y, Simonyan V, Smith K, VedBrat S, Yao MD, Mazumder R. King CH, et al. Among authors: crandall ka. PLoS One. 2019 Sep 11;14(9):e0206484. doi: 10.1371/journal.pone.0206484. eCollection 2019. PLoS One. 2019. PMID: 31509535 Free PMC article.
Mutated CEACAMs Disrupt Transforming Growth Factor Beta Signaling and Alter the Intestinal Microbiome to Promote Colorectal Carcinogenesis.
Gu S, Zaidi S, Hassan MI, Mohammad T, Malta TM, Noushmehr H, Nguyen B, Crandall KA, Srivastav J, Obias V, Lin P, Nguyen BN, Yao M, Yao R, King CH, Mazumder R, Mishra B, Rao S, Mishra L. Gu S, et al. Among authors: crandall ka. Gastroenterology. 2020 Jan;158(1):238-252. doi: 10.1053/j.gastro.2019.09.023. Epub 2019 Oct 1. Gastroenterology. 2020. PMID: 31585122 Free PMC article.
Consumption of sucralose- and acesulfame-potassium-containing diet soda alters the relative abundance of microbial taxa at the species level: findings of two pilot studies.
Sylvetsky AC, Clement RA, Stearrett N, Issa NT, Dore FJ, Mazumder R, King CH, Hubal MJ, Walter PJ, Cai H, Sen S, Rother KI, Crandall KA. Sylvetsky AC, et al. Among authors: crandall ka. Appl Physiol Nutr Metab. 2024 Jan 1;49(1):125-134. doi: 10.1139/apnm-2022-0471. Epub 2023 Oct 30. Appl Physiol Nutr Metab. 2024. PMID: 37902107
Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.
Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH. Speiser DI, et al. Among authors: crandall ka. BMC Bioinformatics. 2014 Nov 19;15(1):350. doi: 10.1186/s12859-014-0350-x. BMC Bioinformatics. 2014. PMID: 25407802 Free PMC article.
Omics community detection using multi-resolution clustering.
Rahnavard A, Chatterjee S, Sayoldin B, Crandall KA, Tekola-Ayele F, Mallick H. Rahnavard A, et al. Among authors: crandall ka. Bioinformatics. 2021 Oct 25;37(20):3588-3594. doi: 10.1093/bioinformatics/btab317. Bioinformatics. 2021. PMID: 33974004 Free PMC article.
251 results