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611 results

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Page 1
Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan.
Thomas SC, Payne D, Tamadonfar KO, Seymour CO, Jiao JY, Murugapiran SK, Lai D, Lau R, Bowen BP, Silva LP, Louie KB, Huntemann M, Clum A, Spunde A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Chen IM, Stamatis D, Reddy TBK, O'Malley R, Daum C, Shapiro N, Ivanova N, Kyrpides NC, Woyke T, Eloe-Fadrosh E, Hamilton TL, Dijkstra P, Dodsworth JA, Northen TR, Li WJ, Hedlund BP. Thomas SC, et al. Among authors: woyke t. Front Microbiol. 2021 May 3;12:632731. doi: 10.3389/fmicb.2021.632731. eCollection 2021. Front Microbiol. 2021. PMID: 34017316 Free PMC article.
A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T.
Siddaramappa S, Challacombe JF, Decastro RE, Pfeiffer F, Sastre DE, Giménez MI, Paggi RA, Detter JC, Davenport KW, Goodwin LA, Kyrpides N, Tapia R, Pitluck S, Lucas S, Woyke T, Maupin-Furlow JA. Siddaramappa S, et al. Among authors: woyke t. BMC Genomics. 2012 May 4;13:165. doi: 10.1186/1471-2164-13-165. BMC Genomics. 2012. PMID: 22559199 Free PMC article.
Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin.
Murugapiran SK, Huntemann M, Wei CL, Han J, Detter JC, Han CS, Erkkila TH, Teshima H, Chen A, Kyrpides N, Mavrommatis K, Markowitz V, Szeto E, Ivanova N, Pagani I, Lam J, McDonald AI, Dodsworth JA, Pati A, Goodwin L, Peters L, Pitluck S, Woyke T, Hedlund BP. Murugapiran SK, et al. Among authors: woyke t. Genome Announc. 2013 Jan;1(1):e00106-12. doi: 10.1128/genomeA.00106-12. Epub 2013 Jan 24. Genome Announc. 2013. PMID: 23405355 Free PMC article.
Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens.
Aylward FO, Tremmel DM, Bruce DC, Chain P, Chen A, Walston Davenport K, Detter C, Han CS, Han J, Huntemann M, Ivanova NN, Kyrpides NC, Markowitz V, Mavrommatis K, Nolan M, Pagani I, Pati A, Pitluck S, Deshpande S, Goodwin L, Woyke T, Currie CR. Aylward FO, et al. Among authors: woyke t. Genome Announc. 2013 Jan;1(1):e00238-12. doi: 10.1128/genomeA.00238-12. Epub 2013 Feb 21. Genome Announc. 2013. PMID: 23469353 Free PMC article.
Insights into the phylogeny and coding potential of microbial dark matter.
Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng JF, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu WT, Eisen JA, Hallam SJ, Kyrpides NC, Stepanauskas R, Rubin EM, Hugenholtz P, Woyke T. Rinke C, et al. Among authors: woyke t. Nature. 2013 Jul 25;499(7459):431-7. doi: 10.1038/nature12352. Epub 2013 Jul 14. Nature. 2013. PMID: 23851394 Free article.
Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strain (3055(T)).
Huntemann M, Stackebrandt E, Held B, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Gronow S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Woyke T, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A. Huntemann M, et al. Among authors: woyke t. Stand Genomic Sci. 2013 May 25;8(2):177-87. doi: 10.4056/sigs.3637201. eCollection 2013. Stand Genomic Sci. 2013. PMID: 23991250 Free PMC article.
Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling.
Murugapiran SK, Huntemann M, Wei CL, Han J, Detter JC, Han C, Erkkila TH, Teshima H, Chen A, Kyrpides N, Mavrommatis K, Markowitz V, Szeto E, Ivanova N, Pagani I, Pati A, Goodwin L, Peters L, Pitluck S, Lam J, McDonald AI, Dodsworth JA, Woyke T, Hedlund BP. Murugapiran SK, et al. Among authors: woyke t. Stand Genomic Sci. 2013 Feb 25;7(3):449-68. doi: 10.4056/sigs.3667269. eCollection 2013. Stand Genomic Sci. 2013. PMID: 24019992 Free PMC article.
IMG 4 version of the integrated microbial genomes comparative analysis system.
Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Pillay M, Ratner A, Huang J, Woyke T, Huntemann M, Anderson I, Billis K, Varghese N, Mavromatis K, Pati A, Ivanova NN, Kyrpides NC. Markowitz VM, et al. Among authors: woyke t. Nucleic Acids Res. 2014 Jan;42(Database issue):D560-7. doi: 10.1093/nar/gkt963. Epub 2013 Oct 27. Nucleic Acids Res. 2014. PMID: 24165883 Free PMC article.
611 results