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UCSC Cell Browser: visualize your single-cell data.
Bioinformatics. 2021 Dec 7;37(23):4578-4580. doi: 10.1093/bioinformatics/btab503.
Bioinformatics. 2021.
PMID: 34244710
Free PMC article.
Identification of a differentiation stall in epithelial mesenchymal transition in histone H3-mutant diffuse midline glioma.
Sanders LM, Cheney A, Seninge L, van den Bout A, Chen M, Beale HC, Kephart ET, Pfeil J, Learned K, Lyle AG, Bjork I, Haussler D, Salama SR, Vaske OM.
Sanders LM, et al. Among authors: seninge l.
Gigascience. 2020 Dec 15;9(12):giaa136. doi: 10.1093/gigascience/giaa136.
Gigascience. 2020.
PMID: 33319914
Free PMC article.
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VEGA is an interpretable generative model for inferring biological network activity in single-cell transcriptomics.
Seninge L, Anastopoulos I, Ding H, Stuart J.
Seninge L, et al.
Nat Commun. 2021 Sep 28;12(1):5684. doi: 10.1038/s41467-021-26017-0.
Nat Commun. 2021.
PMID: 34584103
Free PMC article.
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Prioritizing transcriptional factors in gene regulatory networks with PageRank.
Ding H, Yang Y, Xue Y, Seninge L, Gong H, Safavi R, Califano A, Stuart JM.
Ding H, et al. Among authors: seninge l.
iScience. 2020 Dec 30;24(1):102017. doi: 10.1016/j.isci.2020.102017. eCollection 2021 Jan 22.
iScience. 2020.
PMID: 33490923
Free PMC article.
Item in Clipboard
lincRNA-Cox2 Functions to Regulate Inflammation in Alveolar Macrophages during Acute Lung Injury.
Robinson EK, Worthington A, Poscablo D, Shapleigh B, Salih MM, Halasz H, Seninge L, Mosqueira B, Smaliy V, Forsberg EC, Carpenter S.
Robinson EK, et al. Among authors: seninge l.
J Immunol. 2022 Apr 15;208(8):1886-1900. doi: 10.4049/jimmunol.2100743. Epub 2022 Apr 1.
J Immunol. 2022.
PMID: 35365562
Free PMC article.
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The manatee variational autoencoder model for predicting gene expression alterations caused by transcription factor perturbations.
Yang Y, Seninge L, Wang Z, Oro A, Stuart JM, Ding H.
Yang Y, et al. Among authors: seninge l.
Sci Rep. 2024 May 23;14(1):11794. doi: 10.1038/s41598-024-62620-z.
Sci Rep. 2024.
PMID: 38782963
Free PMC article.
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A Spatiotemporal and Machine-Learning Platform Accelerates the Manufacturing of hPSC-derived Esophageal Mucosa.
Yang Y, McCullough CG, Seninge L, Guo L, Kwon WJ, Zhang Y, Li NY, Gaddam S, Pan C, Zhen H, Torkelson J, Glass IA; Birth Defects Research Laboratory; Charville G, Que J, Stuart J, Ding H, Oro A.
Yang Y, et al. Among authors: seninge l.
bioRxiv [Preprint]. 2023 Oct 26:2023.10.24.563664. doi: 10.1101/2023.10.24.563664.
bioRxiv. 2023.
PMID: 37961271
Free PMC article.
Preprint.
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