Brown JM - Search Results

1

Effective variant filtering and expected candidate variant yield in studies of rare human disease.

Pedersen BS, Brown JM, Dashnow H, Wallace AD, Velinder M, Tristani-Firouzi M, Schiffman JD, Tvrdik T, Mao R, Best DH, Bayrak-Toydemir P, Quinlan AR. Pedersen BS, et al. Among authors: brown jm. NPJ Genom Med. 2021 Jul 15;6(1):60. doi: 10.1038/s41525-021-00227-3. NPJ Genom Med. 2021. PMID: 34267211 Free PMC article.

2

Somalier: rapid relatedness estimation for cancer and germline studies using efficient genome sketches.

Pedersen BS, Bhetariya PJ, Brown J, Kravitz SN, Marth G, Jensen RL, Bronner MP, Underhill HR, Quinlan AR. Pedersen BS, et al. Genome Med. 2020 Jul 14;12(1):62. doi: 10.1186/s13073-020-00761-2. Genome Med. 2020. PMID: 32664994 Free PMC article.

3

Extensive recombination-driven coronavirus diversification expands the pool of potential pandemic pathogens.

Goldstein SA, Brown J, Pedersen BS, Quinlan AR, Elde NC. Goldstein SA, et al. bioRxiv [Preprint]. 2021 Jun 28:2021.02.03.429646. doi: 10.1101/2021.02.03.429646. bioRxiv. 2021. Update in: Genome Biol Evol. 2022 Dec 8;14(12):evac161. doi: 10.1093/gbe/evac161. PMID: 33564759 Free PMC article. Updated. Preprint.

4

De novo structural mutation rates and gamete-of-origin biases revealed through genome sequencing of 2,396 families.

Belyeu JR, Brand H, Wang H, Zhao X, Pedersen BS, Feusier J, Gupta M, Nicholas TJ, Brown J, Baird L, Devlin B, Sanders SJ, Jorde LB, Talkowski ME, Quinlan AR. Belyeu JR, et al. Am J Hum Genet. 2021 Apr 1;108(4):597-607. doi: 10.1016/j.ajhg.2021.02.012. Epub 2021 Mar 5. Am J Hum Genet. 2021. PMID: 33675682 Free PMC article.

5

Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data.

Cormier MJ, Belyeu JR, Pedersen BS, Brown J, Köster J, Quinlan AR. Cormier MJ, et al. Nat Commun. 2021 Apr 12;12(1):2151. doi: 10.1038/s41467-021-22381-z. Nat Commun. 2021. PMID: 33846313 Free PMC article.

6

Samplot: a platform for structural variant visual validation and automated filtering.

Belyeu JR, Chowdhury M, Brown J, Pedersen BS, Cormier MJ, Quinlan AR, Layer RM. Belyeu JR, et al. Genome Biol. 2021 May 25;22(1):161. doi: 10.1186/s13059-021-02380-5. Genome Biol. 2021. PMID: 34034781 Free PMC article.

7

Extensive Recombination-driven Coronavirus Diversification Expands the Pool of Potential Pandemic Pathogens.

Goldstein SA, Brown J, Pedersen BS, Quinlan AR, Elde NC. Goldstein SA, et al. Genome Biol Evol. 2022 Dec 8;14(12):evac161. doi: 10.1093/gbe/evac161. Genome Biol Evol. 2022. PMID: 36477201 Free PMC article.

8

STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci.

Dashnow H, Pedersen BS, Hiatt L, Brown J, Beecroft SJ, Ravenscroft G, LaCroix AJ, Lamont P, Roxburgh RH, Rodrigues MJ, Davis M, Mefford HC, Laing NG, Quinlan AR. Dashnow H, et al. Genome Biol. 2022 Dec 14;23(1):257. doi: 10.1186/s13059-022-02826-4. Genome Biol. 2022. PMID: 36517892 Free PMC article.

9

Review of chemical models and applications in Geant4-DNA: Report from the ESA BioRad III Project.

Tran HN, Archer J, Baldacchino G, Brown JMC, Chappuis F, Cirrone GAP, Desorgher L, Dominguez N, Fattori S, Guatelli S, Ivantchenko V, Méndez JR, Nieminen P, Perrot Y, Sakata D, Santin G, Shin WG, Villagrasa C, Zein S, Incerti S. Tran HN, et al. Among authors: brown jmc. Med Phys. 2024 Jun 18. doi: 10.1002/mp.17256. Online ahead of print. Med Phys. 2024. PMID: 38889367

10

No frugal innovation without frugal evaluation: the Global IDEAL Sub-Framework.

Bolton WS, Aruparayil NK, Cundill B, McCulloch P, Gnanaraj J, Bundu I, Culmer PR, Brown JM, Scott J, Jayne DG. Bolton WS, et al. Among authors: brown jm. BMJ Surg Interv Health Technol. 2024 Jun 12;6(1):e000248. doi: 10.1136/bmjsit-2023-000248. eCollection 2024. BMJ Surg Interv Health Technol. 2024. PMID: 38883696 Free PMC article.

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