Shendure J - Search Results

1

The landscape of alternative polyadenylation in single cells of the developing mouse embryo.

Agarwal V, Lopez-Darwin S, Kelley DR, Shendure J. Agarwal V, et al. Among authors: shendure j. Nat Commun. 2021 Aug 24;12(1):5101. doi: 10.1038/s41467-021-25388-8. Nat Commun. 2021. PMID: 34429411 Free PMC article.

2

Recurrent de novo mutations implicate novel genes underlying simplex autism risk.

O'Roak BJ, Stessman HA, Boyle EA, Witherspoon KT, Martin B, Lee C, Vives L, Baker C, Hiatt JB, Nickerson DA, Bernier R, Shendure J, Eichler EE. O'Roak BJ, et al. Among authors: shendure j. Nat Commun. 2014 Nov 24;5:5595. doi: 10.1038/ncomms6595. Nat Commun. 2014. PMID: 25418537 Free PMC article.

3

Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.

Ma W, Ay F, Lee C, Gulsoy G, Deng X, Cook S, Hesson J, Cavanaugh C, Ware CB, Krumm A, Shendure J, Blau CA, Disteche CM, Noble WS, Duan Z. Ma W, et al. Among authors: shendure j. Nat Methods. 2015 Jan;12(1):71-8. doi: 10.1038/nmeth.3205. Epub 2014 Dec 1. Nat Methods. 2015. PMID: 25437436 Free PMC article.

4

Massively multiplex single-cell Hi-C.

Ramani V, Deng X, Qiu R, Gunderson KL, Steemers FJ, Disteche CM, Noble WS, Duan Z, Shendure J. Ramani V, et al. Among authors: shendure j. Nat Methods. 2017 Mar;14(3):263-266. doi: 10.1038/nmeth.4155. Epub 2017 Jan 30. Nat Methods. 2017. PMID: 28135255 Free PMC article.

5

Quantification of differential gene expression by multiplexed targeted resequencing of cDNA.

Arts P, van der Raadt J, van Gestel SHC, Steehouwer M, Shendure J, Hoischen A, Albers CA. Arts P, et al. Among authors: shendure j. Nat Commun. 2017 May 5;8:15190. doi: 10.1038/ncomms15190. Nat Commun. 2017. PMID: 28474677 Free PMC article.

6

On the design of CRISPR-based single-cell molecular screens.

Hill AJ, McFaline-Figueroa JL, Starita LM, Gasperini MJ, Matreyek KA, Packer J, Jackson D, Shendure J, Trapnell C. Hill AJ, et al. Among authors: shendure j. Nat Methods. 2018 Apr;15(4):271-274. doi: 10.1038/nmeth.4604. Epub 2018 Feb 19. Nat Methods. 2018. PMID: 29457792 Free PMC article.

7

The cis-regulatory dynamics of embryonic development at single-cell resolution.

Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM. Cusanovich DA, et al. Among authors: shendure j. Nature. 2018 Mar 22;555(7697):538-542. doi: 10.1038/nature25981. Epub 2018 Mar 14. Nature. 2018. PMID: 29539636 Free PMC article.

8

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain.

Raj B, Wagner DE, McKenna A, Pandey S, Klein AM, Shendure J, Gagnon JA, Schier AF. Raj B, et al. Among authors: shendure j. Nat Biotechnol. 2018 Jun;36(5):442-450. doi: 10.1038/nbt.4103. Epub 2018 Mar 28. Nat Biotechnol. 2018. PMID: 29608178 Free PMC article.

9

Orientation-dependent Dxz4 contacts shape the 3D structure of the inactive X chromosome.

Bonora G, Deng X, Fang H, Ramani V, Qiu R, Berletch JB, Filippova GN, Duan Z, Shendure J, Noble WS, Disteche CM. Bonora G, et al. Among authors: shendure j. Nat Commun. 2018 Apr 13;9(1):1445. doi: 10.1038/s41467-018-03694-y. Nat Commun. 2018. PMID: 29654302 Free PMC article.

10

Functional characterization of enhancer evolution in the primate lineage.

Klein JC, Keith A, Agarwal V, Durham T, Shendure J. Klein JC, et al. Among authors: shendure j. Genome Biol. 2018 Jul 25;19(1):99. doi: 10.1186/s13059-018-1473-6. Genome Biol. 2018. PMID: 30045748 Free PMC article.

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