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Different versions of the Dayhoff rate matrix.
Kosiol C, Goldman N. Kosiol C, et al. Among authors: goldman n. Mol Biol Evol. 2005 Feb;22(2):193-9. doi: 10.1093/molbev/msi005. Epub 2004 Oct 13. Mol Biol Evol. 2005. PMID: 15483331
An empirical codon model for protein sequence evolution.
Kosiol C, Holmes I, Goldman N. Kosiol C, et al. Among authors: goldman n. Mol Biol Evol. 2007 Jul;24(7):1464-79. doi: 10.1093/molbev/msm064. Epub 2007 Mar 30. Mol Biol Evol. 2007. PMID: 17400572
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome.
Margulies EH, Cooper GM, Asimenos G, Thomas DJ, Dewey CN, Siepel A, Birney E, Keefe D, Schwartz AS, Hou M, Taylor J, Nikolaev S, Montoya-Burgos JI, Löytynoja A, Whelan S, Pardi F, Massingham T, Brown JB, Bickel P, Holmes I, Mullikin JC, Ureta-Vidal A, Paten B, Stone EA, Rosenbloom KR, Kent WJ, Bouffard GG, Guan X, Hansen NF, Idol JR, Maduro VV, Maskeri B, McDowell JC, Park M, Thomas PJ, Young AC, Blakesley RW, Muzny DM, Sodergren E, Wheeler DA, Worley KC, Jiang H, Weinstock GM, Gibbs RA, Graves T, Fulton R, Mardis ER, Wilson RK, Clamp M, Cuff J, Gnerre S, Jaffe DB, Chang JL, Lindblad-Toh K, Lander ES, Hinrichs A, Trumbower H, Clawson H, Zweig A, Kuhn RM, Barber G, Harte R, Karolchik D, Field MA, Moore RA, Matthewson CA, Schein JE, Marra MA, Antonarakis SE, Batzoglou S, Goldman N, Hardison R, Haussler D, Miller W, Pachter L, Green ED, Sidow A. Margulies EH, et al. Among authors: goldman n. Genome Res. 2007 Jun;17(6):760-74. doi: 10.1101/gr.6034307. Genome Res. 2007. PMID: 17567995 Free PMC article.
549 results