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Page 1
Persistence and plasticity in bacterial gene regulation.
Baumgart LA, Lee JE, Salamov A, Dilworth DJ, Na H, Mingay M, Blow MJ, Zhang Y, Yoshinaga Y, Daum CG, O'Malley RC. Baumgart LA, et al. Among authors: yoshinaga y. Nat Methods. 2021 Dec;18(12):1499-1505. doi: 10.1038/s41592-021-01312-2. Epub 2021 Nov 25. Nat Methods. 2021. PMID: 34824476
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities.
Nagy LG, Riley R, Tritt A, Adam C, Daum C, Floudas D, Sun H, Yadav JS, Pangilinan J, Larsson KH, Matsuura K, Barry K, Labutti K, Kuo R, Ohm RA, Bhattacharya SS, Shirouzu T, Yoshinaga Y, Martin FM, Grigoriev IV, Hibbett DS. Nagy LG, et al. Among authors: yoshinaga y. Mol Biol Evol. 2016 Apr;33(4):959-70. doi: 10.1093/molbev/msv337. Epub 2015 Dec 10. Mol Biol Evol. 2016. PMID: 26659563
Lineage-specific chromatin signatures reveal a regulator of lipid metabolism in microalgae.
Ngan CY, Wong CH, Choi C, Yoshinaga Y, Louie K, Jia J, Chen C, Bowen B, Cheng H, Leonelli L, Kuo R, Baran R, García-Cerdán JG, Pratap A, Wang M, Lim J, Tice H, Daum C, Xu J, Northen T, Visel A, Bristow J, Niyogi KK, Wei CL. Ngan CY, et al. Among authors: yoshinaga y. Nat Plants. 2015 Jul 27;1:15107. doi: 10.1038/nplants.2015.107. Nat Plants. 2015. PMID: 27250540
Genome Sequencing.
Yoshinaga Y, Daum C, He G, O'Malley R. Yoshinaga Y, et al. Methods Mol Biol. 2018;1775:37-52. doi: 10.1007/978-1-4939-7804-5_4. Methods Mol Biol. 2018. PMID: 29876807
The genomic landscape of molecular responses to natural drought stress in Panicum hallii.
Lovell JT, Jenkins J, Lowry DB, Mamidi S, Sreedasyam A, Weng X, Barry K, Bonnette J, Campitelli B, Daum C, Gordon SP, Gould BA, Khasanova A, Lipzen A, MacQueen A, Palacio-Mejía JD, Plott C, Shakirov EV, Shu S, Yoshinaga Y, Zane M, Kudrna D, Talag JD, Rokhsar D, Grimwood J, Schmutz J, Juenger TE. Lovell JT, et al. Among authors: yoshinaga y. Nat Commun. 2018 Dec 6;9(1):5213. doi: 10.1038/s41467-018-07669-x. Nat Commun. 2018. PMID: 30523281 Free PMC article.
High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types.
Shulse CN, Cole BJ, Ciobanu D, Lin J, Yoshinaga Y, Gouran M, Turco GM, Zhu Y, O'Malley RC, Brady SM, Dickel DE. Shulse CN, et al. Among authors: yoshinaga y. Cell Rep. 2019 May 14;27(7):2241-2247.e4. doi: 10.1016/j.celrep.2019.04.054. Cell Rep. 2019. PMID: 31091459 Free PMC article.
A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism.
Cooper EA, Brenton ZW, Flinn BS, Jenkins J, Shu S, Flowers D, Luo F, Wang Y, Xia P, Barry K, Daum C, Lipzen A, Yoshinaga Y, Schmutz J, Saski C, Vermerris W, Kresovich S. Cooper EA, et al. Among authors: yoshinaga y. BMC Genomics. 2019 May 27;20(1):420. doi: 10.1186/s12864-019-5734-x. BMC Genomics. 2019. PMID: 31133004 Free PMC article.
Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses.
Varoquaux N, Cole B, Gao C, Pierroz G, Baker CR, Patel D, Madera M, Jeffers T, Hollingsworth J, Sievert J, Yoshinaga Y, Owiti JA, Singan VR, DeGraaf S, Xu L, Blow MJ, Harrison MJ, Visel A, Jansson C, Niyogi KK, Hutmacher R, Coleman-Derr D, O'Malley RC, Taylor JW, Dahlberg J, Vogel JP, Lemaux PG, Purdom E. Varoquaux N, et al. Among authors: yoshinaga y. Proc Natl Acad Sci U S A. 2019 Dec 26;116(52):27124-27132. doi: 10.1073/pnas.1907500116. Epub 2019 Dec 5. Proc Natl Acad Sci U S A. 2019. PMID: 31806758 Free PMC article.
101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens.
Haridas S, Albert R, Binder M, Bloem J, LaButti K, Salamov A, Andreopoulos B, Baker SE, Barry K, Bills G, Bluhm BH, Cannon C, Castanera R, Culley DE, Daum C, Ezra D, González JB, Henrissat B, Kuo A, Liang C, Lipzen A, Lutzoni F, Magnuson J, Mondo SJ, Nolan M, Ohm RA, Pangilinan J, Park HJ, Ramírez L, Alfaro M, Sun H, Tritt A, Yoshinaga Y, Zwiers LH, Turgeon BG, Goodwin SB, Spatafora JW, Crous PW, Grigoriev IV. Haridas S, et al. Among authors: yoshinaga y. Stud Mycol. 2020 Feb 1;96:141-153. doi: 10.1016/j.simyco.2020.01.003. eCollection 2020 Jun. Stud Mycol. 2020. PMID: 32206138 Free PMC article.
Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.
Lovell JT, MacQueen AH, Mamidi S, Bonnette J, Jenkins J, Napier JD, Sreedasyam A, Healey A, Session A, Shu S, Barry K, Bonos S, Boston L, Daum C, Deshpande S, Ewing A, Grabowski PP, Haque T, Harrison M, Jiang J, Kudrna D, Lipzen A, Pendergast TH 4th, Plott C, Qi P, Saski CA, Shakirov EV, Sims D, Sharma M, Sharma R, Stewart A, Singan VR, Tang Y, Thibivillier S, Webber J, Weng X, Williams M, Wu GA, Yoshinaga Y, Zane M, Zhang L, Zhang J, Behrman KD, Boe AR, Fay PA, Fritschi FB, Jastrow JD, Lloyd-Reilley J, Martínez-Reyna JM, Matamala R, Mitchell RB, Rouquette FM Jr, Ronald P, Saha M, Tobias CM, Udvardi M, Wing RA, Wu Y, Bartley LE, Casler M, Devos KM, Lowry DB, Rokhsar DS, Grimwood J, Juenger TE, Schmutz J. Lovell JT, et al. Among authors: yoshinaga y. Nature. 2021 Feb;590(7846):438-444. doi: 10.1038/s41586-020-03127-1. Epub 2021 Jan 27. Nature. 2021. PMID: 33505029 Free PMC article.
239 results