Koskela J - Search Results

1

Efficient ancestry and mutation simulation with msprime 1.0.

Baumdicker F, Bisschop G, Goldstein D, Gower G, Ragsdale AP, Tsambos G, Zhu S, Eldon B, Ellerman EC, Galloway JG, Gladstein AL, Gorjanc G, Guo B, Jeffery B, Kretzschumar WW, Lohse K, Matschiner M, Nelson D, Pope NS, Quinto-Cortés CD, Rodrigues MF, Saunack K, Sellinger T, Thornton K, van Kemenade H, Wohns AW, Wong Y, Gravel S, Kern AD, Koskela J, Ralph PL, Kelleher J. Baumdicker F, et al. Among authors: koskela j. Genetics. 2022 Mar 3;220(3):iyab229. doi: 10.1093/genetics/iyab229. Genetics. 2022. PMID: 34897427 Free PMC article.

2

Multi-locus data distinguishes between population growth and multiple merger coalescents.

Koskela J. Koskela J. Stat Appl Genet Mol Biol. 2018 Jun 13;17(3). doi: 10.1515/sagmb-2017-0011. Stat Appl Genet Mol Biol. 2018. PMID: 29897888 Free article.

3

Bayesian inference of ancestral recombination graphs.

Mahmoudi A, Koskela J, Kelleher J, Chan YB, Balding D. Mahmoudi A, et al. Among authors: koskela j. PLoS Comput Biol. 2022 Mar 9;18(3):e1009960. doi: 10.1371/journal.pcbi.1009960. eCollection 2022 Mar. PLoS Comput Biol. 2022. PMID: 35263345 Free PMC article.

4

Sweepstakes reproductive success via pervasive and recurrent selective sweeps.

Árnason E, Koskela J, Halldórsdóttir K, Eldon B. Árnason E, et al. Among authors: koskela j. Elife. 2023 Feb 20;12:e80781. doi: 10.7554/eLife.80781. Elife. 2023. PMID: 36806325 Free PMC article.

5

A general and efficient representation of ancestral recombination graphs.

Wong Y, Ignatieva A, Koskela J, Gorjanc G, Wohns AW, Kelleher J. Wong Y, et al. Among authors: koskela j. bioRxiv [Preprint]. 2024 Apr 23:2023.11.03.565466. doi: 10.1101/2023.11.03.565466. bioRxiv. 2024. PMID: 37961279 Free PMC article. Preprint.

6

EWF: simulating exact paths of the Wright-Fisher diffusion.

Sant J, Jenkins PA, Koskela J, Spanò D. Sant J, et al. Among authors: koskela j. Bioinformatics. 2023 Jan 1;39(1):btad017. doi: 10.1093/bioinformatics/btad017. Bioinformatics. 2023. PMID: 36629450 Free PMC article.

7

Statistical tools for seed bank detection.

Blath J, Buzzoni E, Koskela J, Wilke Berenguer M. Blath J, et al. Among authors: koskela j. Theor Popul Biol. 2020 Apr;132:1-15. doi: 10.1016/j.tpb.2020.01.001. Epub 2020 Jan 13. Theor Popul Biol. 2020. PMID: 31945384

8

Robust model selection between population growth and multiple merger coalescents.

Koskela J, Wilke Berenguer M. Koskela J, et al. Math Biosci. 2019 May;311:1-12. doi: 10.1016/j.mbs.2019.03.004. Epub 2019 Mar 6. Math Biosci. 2019. PMID: 30851276

9

Bernoulli factories and duality in Wright-Fisher and Allen-Cahn models of population genetics.

Koskela J, Łatuszyński K, Spanò D. Koskela J, et al. Theor Popul Biol. 2024 Apr;156:40-45. doi: 10.1016/j.tpb.2024.01.002. Epub 2024 Jan 30. Theor Popul Biol. 2024. PMID: 38301934 Free article.

10

Comprehensive Inherited Risk Estimation for Risk-Based Breast Cancer Screening in Women.

Mars N, Kerminen S, Tamlander M, Pirinen M, Jakkula E, Aaltonen K, Meretoja T, Heinävaara S, Widén E, Ripatti S; FinnGen. Mars N, et al. J Clin Oncol. 2024 May 1;42(13):1477-1487. doi: 10.1200/JCO.23.00295. Epub 2024 Feb 29. J Clin Oncol. 2024. PMID: 38422475 Free PMC article.

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