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Structural insights in cell-type specific evolution of intra-host diversity by SARS-CoV-2.
Gupta K, Toelzer C, Williamson MK, Shoemark DK, Oliveira ASF, Matthews DA, Almuqrin A, Staufer O, Yadav SKN, Borucu U, Garzoni F, Fitzgerald D, Spatz J, Mulholland AJ, Davidson AD, Schaffitzel C, Berger I. Gupta K, et al. Among authors: matthews da. Nat Commun. 2022 Jan 11;13(1):222. doi: 10.1038/s41467-021-27881-6. Nat Commun. 2022. PMID: 35017512 Free PMC article.
Proteomics technique opens new frontiers in mobilome research.
Davidson AD, Matthews DA, Maringer K. Davidson AD, et al. Among authors: matthews da. Mob Genet Elements. 2017 Aug 1;7(4):1-9. doi: 10.1080/2159256X.2017.1362494. eCollection 2017. Mob Genet Elements. 2017. PMID: 28932623 Free PMC article.
Characterisation of the transcriptome and proteome of SARS-CoV-2 reveals a cell passage induced in-frame deletion of the furin-like cleavage site from the spike glycoprotein.
Davidson AD, Williamson MK, Lewis S, Shoemark D, Carroll MW, Heesom KJ, Zambon M, Ellis J, Lewis PA, Hiscox JA, Matthews DA. Davidson AD, et al. Among authors: matthews da. Genome Med. 2020 Jul 28;12(1):68. doi: 10.1186/s13073-020-00763-0. Genome Med. 2020. PMID: 32723359 Free PMC article.
Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism.
Moore SC, Penrice-Randal R, Alruwaili M, Randle N, Armstrong S, Hartley C, Haldenby S, Dong X, Alrezaihi A, Almsaud M, Bentley E, Clark J, García-Dorival I, Gilmore P, Han X, Jones B, Luu L, Sharma P, Shawli G, Sun Y, Zhao Q, Pullan ST, Carter DP, Bewley K, Dunning J, Zhou EM, Solomon T, Beadsworth M, Cruise J, Crook DW, Matthews DA, Davidson AD, Mahmood Z, Aljabr W, Druce J, Vipond R, Ng L, Renia L, Openshaw PJM, Baillie JK, Carroll MW, Stewart J, Darby A, Semple M, Turtle L, Hiscox JA. Moore SC, et al. Among authors: matthews da. Viruses. 2020 Oct 14;12(10):1164. doi: 10.3390/v12101164. Viruses. 2020. PMID: 33066701 Free PMC article.
Neuropilin-1 is a host factor for SARS-CoV-2 infection.
Daly JL, Simonetti B, Klein K, Chen KE, Williamson MK, Antón-Plágaro C, Shoemark DK, Simón-Gracia L, Bauer M, Hollandi R, Greber UF, Horvath P, Sessions RB, Helenius A, Hiscox JA, Teesalu T, Matthews DA, Davidson AD, Collins BM, Cullen PJ, Yamauchi Y. Daly JL, et al. Among authors: matthews da. Science. 2020 Nov 13;370(6518):861-865. doi: 10.1126/science.abd3072. Epub 2020 Oct 20. Science. 2020. PMID: 33082294 Free PMC article.
Detecting SARS-CoV-2 variants with SNP genotyping.
Harper H, Burridge A, Winfield M, Finn A, Davidson A, Matthews D, Hutchings S, Vipond B, Jain N; COVID-19 Genomics UK (COG-UK) Consortium; Edwards K, Barker G. Harper H, et al. PLoS One. 2021 Feb 24;16(2):e0243185. doi: 10.1371/journal.pone.0243185. eCollection 2021. PLoS One. 2021. PMID: 33626040 Free PMC article.
SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription.
Almuqrin A, Davidson AD, Williamson MK, Lewis PA, Heesom KJ, Morris S, Gilbert SC, Matthews DA. Almuqrin A, et al. Among authors: matthews da. Genome Med. 2021 Mar 15;13(1):43. doi: 10.1186/s13073-021-00859-1. Genome Med. 2021. PMID: 33722288 Free PMC article.
236 results