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Assessing the role of multiple mechanisms increasing the age of dengue cases in Thailand.
Huang AT, Takahashi S, Salje H, Wang L, Garcia-Carreras B, Anderson K, Endy T, Thomas S, Rothman AL, Klungthong C, Jones AR, Fernandez S, Iamsirithaworn S, Doung-Ngern P, Rodriguez-Barraquer I, Cummings DAT. Huang AT, et al. Among authors: takahashi s. Proc Natl Acad Sci U S A. 2022 May 17;119(20):e2115790119. doi: 10.1073/pnas.2115790119. Epub 2022 May 9. Proc Natl Acad Sci U S A. 2022. PMID: 35533273 Free PMC article.
SARS-CoV-2 Serology Across Scales: A Framework for Unbiased Estimation of Cumulative Incidence Incorporating Antibody Kinetics and Epidemic Recency.
Takahashi S, Peluso MJ, Hakim J, Turcios K, Janson O, Routledge I, Busch MP, Hoh R, Tai V, Kelly JD, Martin JN, Deeks SG, Henrich TJ, Greenhouse B, Rodríguez-Barraquer I. Takahashi S, et al. Am J Epidemiol. 2023 Sep 1;192(9):1562-1575. doi: 10.1093/aje/kwad106. Am J Epidemiol. 2023. PMID: 37119030 Free PMC article.
The seasonality of nonpolio enteroviruses in the United States: Patterns and drivers.
Pons-Salort M, Oberste MS, Pallansch MA, Abedi GR, Takahashi S, Grenfell BT, Grassly NC. Pons-Salort M, et al. Among authors: takahashi s. Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3078-3083. doi: 10.1073/pnas.1721159115. Epub 2018 Mar 5. Proc Natl Acad Sci U S A. 2018. PMID: 29507246 Free PMC article.
Seroepidemiologic Study Designs for Determining SARS-COV-2 Transmission and Immunity.
Clapham H, Hay J, Routledge I, Takahashi S, Choisy M, Cummings D, Grenfell B, Metcalf CJE, Mina M, Barraquer IR, Salje H, Tam CC. Clapham H, et al. Among authors: takahashi s. Emerg Infect Dis. 2020 Sep;26(9):1978-1986. doi: 10.3201/eid2609.201840. Epub 2020 Jun 16. Emerg Infect Dis. 2020. PMID: 32544053 Free PMC article.
Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco using electronic health records.
Routledge I, Epstein A, Takahashi S, Janson O, Hakim J, Duarte E, Turcios K, Vinden J, Sujishi K, Rangel J, Coh M, Besana L, Ho WK, Oon CY, Ong CM, Yun C, Lynch K, Wu AHB, Wu W, Karlon W, Thornborrow E, Peluso MJ, Henrich TJ, Pak JE, Briggs J, Greenhouse B, Rodriguez-Barraquer I. Routledge I, et al. Among authors: takahashi s. Nat Commun. 2021 Jun 11;12(1):3566. doi: 10.1038/s41467-021-23651-6. Nat Commun. 2021. PMID: 34117227 Free PMC article.
Using sero-epidemiology to monitor disparities in vaccination and infection with SARS-CoV-2.
Routledge I, Takahashi S, Epstein A, Hakim J, Janson O, Turcios K, Vinden J, Risos JT, Baniqued MR, Pham L, Di Germanio C, Busch M, Kushel M, Greenhouse B, Rodríguez-Barraquer I. Routledge I, et al. Among authors: takahashi s. Nat Commun. 2022 May 4;13(1):2451. doi: 10.1038/s41467-022-30051-x. Nat Commun. 2022. PMID: 35508478 Free PMC article.
TNF-α+ CD4+ T cells dominate the SARS-CoV-2 specific T cell response in COVID-19 outpatients and are associated with durable antibodies.
van der Ploeg K, Kirosingh AS, Mori DAM, Chakraborty S, Hu Z, Sievers BL, Jacobson KB, Bonilla H, Parsonnet J, Andrews JR, Press KD, Ty MC, Ruiz-Betancourt DR, de la Parte L, Tan GS, Blish CA, Takahashi S, Rodriguez-Barraquer I, Greenhouse B, Singh U, Wang TT, Jagannathan P. van der Ploeg K, et al. Among authors: takahashi s. Cell Rep Med. 2022 Jun 21;3(6):100640. doi: 10.1016/j.xcrm.2022.100640. Epub 2022 May 3. Cell Rep Med. 2022. PMID: 35588734 Free PMC article.
Early immune markers of clinical, virological, and immunological outcomes in patients with COVID-19: a multi-omics study.
Hu Z, van der Ploeg K, Chakraborty S, Arunachalam PS, Mori DAM, Jacobson KB, Bonilla H, Parsonnet J, Andrews JR, Holubar M, Subramanian A, Khosla C, Maldonado Y, Hedlin H, de la Parte L, Press K, Ty M, Tan GS, Blish C, Takahashi S, Rodriguez-Barraquer I, Greenhouse B, Butte AJ, Singh U, Pulendran B, Wang TT, Jagannathan P. Hu Z, et al. Among authors: takahashi s. Elife. 2022 Oct 14;11:e77943. doi: 10.7554/eLife.77943. Elife. 2022. PMID: 36239699 Free PMC article.
Antibodies to repeat-containing antigens in Plasmodium falciparum are exposure-dependent and short-lived in children in natural malaria infections.
Raghavan M, Kalantar KL, Duarte E, Teyssier N, Takahashi S, Kung AF, Rajan JV, Rek J, Tetteh KKA, Drakeley C, Ssewanyana I, Rodriguez-Barraquer I, Greenhouse B, DeRisi JL. Raghavan M, et al. Among authors: takahashi s. Elife. 2023 Feb 15;12:e81401. doi: 10.7554/eLife.81401. Elife. 2023. PMID: 36790168 Free PMC article.
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