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Systems-Based Approach for Optimization of Assembly-Free Bacterial MLST Mapping.
Life (Basel). 2022 Apr 30;12(5):670. doi: 10.3390/life12050670.
Life (Basel). 2022.
PMID: 35629339
Free PMC article.
ProkEvo: an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.
Pavlovikj N, Gomes-Neto JC, Deogun JS, Benson AK.
Pavlovikj N, et al.
PeerJ. 2021 May 21;9:e11376. doi: 10.7717/peerj.11376. eCollection 2021.
PeerJ. 2021.
PMID: 34055480
Free PMC article.
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Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations.
Pavlovikj N, Gomes-Neto JC, Benson AK.
Pavlovikj N, et al.
J Vis Exp. 2021 Dec 7;(178). doi: 10.3791/63115.
J Vis Exp. 2021.
PMID: 34958071
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Captive Common Marmosets (Callithrix jacchus) Are Colonized throughout Their Lives by a Community of Bifidobacterium Species with Species-Specific Genomic Content That Can Support Adaptation to Distinct Metabolic Niches.
Zhu L, Yang Q, Suhr Van Haute MJ, Kok CR, Gomes-Neto JC, Pavlovikj N, Pillai R, Sinha R, Hassenstab H, Mustoe A, Moriyama EN, Hutkins R, French J, Benson AK.
Zhu L, et al. Among authors: pavlovikj n.
mBio. 2021 Aug 31;12(4):e0115321. doi: 10.1128/mBio.01153-21. Epub 2021 Aug 3.
mBio. 2021.
PMID: 34340536
Free PMC article.
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Increased Dietary Trp, Thr, and Met Supplementation Improves Performance, Health, and Protein Metabolism of Weaned Piglets under Mixed Management and Poor Housing Conditions.
Gonçalves JPR, Melo ADB, Yang Q, de Oliveira MJK, Marçal DA, Ortiz MT, Righetti Arnaut P, França I, Alves da Cunha Valini G, Silva CA, Korth N, Pavlovikj N, Campos PHRF, Brand HG, Htoo JK, Gomes-Neto JC, Benson AK, Hauschild L.
Gonçalves JPR, et al. Among authors: pavlovikj n.
Animals (Basel). 2024 Apr 9;14(8):1143. doi: 10.3390/ani14081143.
Animals (Basel). 2024.
PMID: 38672291
Free PMC article.
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Salmonella enterica induces biogeography-specific changes in the gut microbiome of pigs.
Gomes-Neto JC, Pavlovikj N, Korth N, Naberhaus SA, Arruda B, Benson AK, Kreuder AJ.
Gomes-Neto JC, et al. Among authors: pavlovikj n.
Front Vet Sci. 2023 Sep 14;10:1186554. doi: 10.3389/fvets.2023.1186554. eCollection 2023.
Front Vet Sci. 2023.
PMID: 37781286
Free PMC article.
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