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Building the next generation of virtual cells to understand cellular biology.
Johnson GT, Agmon E, Akamatsu M, Lundberg E, Lyons B, Ouyang W, Quintero-Carmona OA, Riel-Mehan M, Rafelski S, Horwitz R. Johnson GT, et al. Among authors: lundberg e. Biophys J. 2023 Sep 19;122(18):3560-3569. doi: 10.1016/j.bpj.2023.04.006. Epub 2023 Apr 11. Biophys J. 2023. PMID: 37050874 Free article. Review.
Macromolecular condensation organizes nucleolar sub-phases to set up a pH gradient.
King MR, Ruff KM, Lin AZ, Pant A, Farag M, Lalmansingh JM, Wu T, Fossat MJ, Ouyang W, Lew MD, Lundberg E, Vahey MD, Pappu RV. King MR, et al. Among authors: lundberg e. Cell. 2024 Apr 11;187(8):1889-1906.e24. doi: 10.1016/j.cell.2024.02.029. Epub 2024 Mar 18. Cell. 2024. PMID: 38503281 Free article.
Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms.
Jain Y, Godwin LL, Joshi S, Mandarapu S, Le T, Lindskog C, Lundberg E, Börner K. Jain Y, et al. Among authors: lundberg e. bioRxiv [Preprint]. 2023 Jan 6:2023.01.05.522764. doi: 10.1101/2023.01.05.522764. bioRxiv. 2023. Update in: Nat Commun. 2023 Aug 3;14(1):4656. doi: 10.1038/s41467-023-40291-0. PMID: 36711953 Free PMC article. Updated. Preprint.
Xist ribonucleoproteins promote female sex-biased autoimmunity.
Dou DR, Zhao Y, Belk JA, Zhao Y, Casey KM, Chen DC, Li R, Yu B, Srinivasan S, Abe BT, Kraft K, Hellström C, Sjöberg R, Chang S, Feng A, Goldman DW, Shah AA, Petri M, Chung LS, Fiorentino DF, Lundberg EK, Wutz A, Utz PJ, Chang HY. Dou DR, et al. Cell. 2024 Feb 1;187(3):733-749.e16. doi: 10.1016/j.cell.2023.12.037. Cell. 2024. PMID: 38306984 Free article.
Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images.
Wernersson E, Gelali E, Girelli G, Wang S, Castillo D, Mattsson Langseth C, Verron Q, Nguyen HQ, Chattoraj S, Martinez Casals A, Blom H, Lundberg E, Nilsson M, Marti-Renom MA, Wu CT, Crosetto N, Bienko M. Wernersson E, et al. Among authors: lundberg e. Nat Methods. 2024 Jun 6. doi: 10.1038/s41592-024-02294-7. Online ahead of print. Nat Methods. 2024. PMID: 38844629
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines.
Clark T, Mohan J, Schaffer L, Obernier K, Al Manir S, Churas CP, Dailamy A, Doctor Y, Forget A, Hansen JN, Hu M, Lenkiewicz J, Levinson MA, Marquez C, Nourreddine S, Niestroy J, Pratt D, Qian G, Thaker S, Bélisle-Pipon JC, Brandt C, Chen J, Ding Y, Fodeh S, Krogan N, Lundberg E, Mali P, Payne-Foster P, Ratcliffe S, Ravitsky V, Sali A, Schulz W, Ideker T. Clark T, et al. Among authors: lundberg e. bioRxiv [Preprint]. 2024 May 24:2024.05.21.589311. doi: 10.1101/2024.05.21.589311. bioRxiv. 2024. PMID: 38826258 Free PMC article. Preprint.
246 results