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maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines.
Chetnik K, Benedetti E, Gomari DP, Schweickart A, Batra R, Buyukozkan M, Wang Z, Arnold M, Zierer J, Suhre K, Krumsiek J. Chetnik K, et al. Among authors: benedetti e. Bioinformatics. 2022 Jan 27;38(4):1168-1170. doi: 10.1093/bioinformatics/btab741. Bioinformatics. 2022. PMID: 34694386 Free PMC article.
Multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.
Batra R, Whalen W, Alvarez-Mulett S, Gómez-Escobar LG, Hoffman KL, Simmons W, Harrington J, Chetnik K, Buyukozkan M, Benedetti E, Choi ME, Suhre K, Schenck E, Choi AMK, Schmidt F, Cho SJ, Krumsiek J. Batra R, et al. Among authors: benedetti e. medRxiv [Preprint]. 2022 Aug 13:2022.05.16.22274587. doi: 10.1101/2022.05.16.22274587. medRxiv. 2022. PMID: 35982655 Free PMC article. Updated. Preprint.
Urine-based multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.
Batra R, Uni R, Akchurin OM, Alvarez-Mulett S, Gómez-Escobar LG, Patino E, Hoffman KL, Simmons W, Chetnik K, Buyukozkan M, Benedetti E, Suhre K, Schenck E, Cho SJ, Choi AMK, Schmidt F, Choi ME, Krumsiek J. Batra R, et al. Among authors: benedetti e. medRxiv [Preprint]. 2022 Aug 10:2022.08.10.22277939. doi: 10.1101/2022.08.10.22277939. medRxiv. 2022. PMID: 35982662 Free PMC article. Updated. Preprint.
Authors' Reply.
Price DR, Benedetti E, Krumsiek J. Price DR, et al. Among authors: benedetti e. Am J Pathol. 2022 Sep;192(9):1337-1338. doi: 10.1016/j.ajpath.2022.06.014. Am J Pathol. 2022. PMID: 36064256 Free PMC article. No abstract available.
Network inference from glycoproteomics data reveals new reactions in the IgG glycosylation pathway.
Benedetti E, Pučić-Baković M, Keser T, Wahl A, Hassinen A, Yang JY, Liu L, Trbojević-Akmačić I, Razdorov G, Štambuk J, Klarić L, Ugrina I, Selman MHJ, Wuhrer M, Rudan I, Polasek O, Hayward C, Grallert H, Strauch K, Peters A, Meitinger T, Gieger C, Vilaj M, Boons GJ, Moremen KW, Ovchinnikova T, Bovin N, Kellokumpu S, Theis FJ, Lauc G, Krumsiek J. Benedetti E, et al. Nat Commun. 2017 Nov 14;8(1):1483. doi: 10.1038/s41467-017-01525-0. Nat Commun. 2017. PMID: 29133956 Free PMC article.
Integration of Metabolomic and Other Omics Data in Population-Based Study Designs: An Epidemiological Perspective.
Chu SH, Huang M, Kelly RS, Benedetti E, Siddiqui JK, Zeleznik OA, Pereira A, Herrington D, Wheelock CE, Krumsiek J, McGeachie M, Moore SC, Kraft P, Mathé E, Lasky-Su J; Consortium of Metabolomics Studies Statistics Working Group. Chu SH, et al. Among authors: benedetti e. Metabolites. 2019 Jun 18;9(6):117. doi: 10.3390/metabo9060117. Metabolites. 2019. PMID: 31216675 Free PMC article. Review.
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