Palopoli N - Search Results

1

CaviDB: a database of cavities and their features in the structural and conformational space of proteins.

Velez Rueda AJ, Bulgarelli FL, Palopoli N, Parisi G. Velez Rueda AJ, et al. Among authors: palopoli n. Database (Oxford). 2023 May 10;2023:baad010. doi: 10.1093/database/baad010. Database (Oxford). 2023. PMID: 37162753 Free PMC article.

2

MetaBase--the wiki-database of biological databases.

Bolser DM, Chibon PY, Palopoli N, Gong S, Jacob D, Del Angel VD, Swan D, Bassi S, González V, Suravajhala P, Hwang S, Romano P, Edwards R, Bishop B, Eargle J, Shtatland T, Provart NJ, Clements D, Renfro DP, Bhak D, Bhak J. Bolser DM, et al. Among authors: palopoli n. Nucleic Acids Res. 2012 Jan;40(Database issue):D1250-4. doi: 10.1093/nar/gkr1099. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22139927 Free PMC article.

3

QSLiMFinder: improved short linear motif prediction using specific query protein data.

Palopoli N, Lythgow KT, Edwards RJ. Palopoli N, et al. Bioinformatics. 2015 Jul 15;31(14):2284-93. doi: 10.1093/bioinformatics/btv155. Epub 2015 Mar 19. Bioinformatics. 2015. PMID: 25792551 Free PMC article.

4

Computational prediction of short linear motifs from protein sequences.

Edwards RJ, Palopoli N. Edwards RJ, et al. Among authors: palopoli n. Methods Mol Biol. 2015;1268:89-141. doi: 10.1007/978-1-4939-2285-7_6. Methods Mol Biol. 2015. PMID: 25555723 Review.

5

Starch-synthase III family encodes a tandem of three starch-binding domains.

Palopoli N, Busi MV, Fornasari MS, Gomez-Casati D, Ugalde R, Parisi G. Palopoli N, et al. Proteins. 2006 Oct 1;65(1):27-31. doi: 10.1002/prot.21007. Proteins. 2006. PMID: 16862594

6

Functional and structural characterization of the catalytic domain of the starch synthase III from Arabidopsis thaliana.

Busi MV, Palopoli N, Valdez HA, Fornasari MS, Wayllace NZ, Gomez-Casati DF, Parisi G, Ugalde RA. Busi MV, et al. Among authors: palopoli n. Proteins. 2008 Jan 1;70(1):31-40. doi: 10.1002/prot.21469. Proteins. 2008. PMID: 17623838

7

Protein conformational diversity modulates sequence divergence.

Juritz E, Palopoli N, Fornasari MS, Fernandez-Alberti S, Parisi G. Juritz E, et al. Among authors: palopoli n. Mol Biol Evol. 2013 Jan;30(1):79-87. doi: 10.1093/molbev/mss080. Epub 2012 Mar 6. Mol Biol Evol. 2013. PMID: 22396525

8

BeEP Server: Using evolutionary information for quality assessment of protein structure models.

Palopoli N, Lanzarotti E, Parisi G. Palopoli N, et al. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W398-405. doi: 10.1093/nar/gkt453. Epub 2013 May 31. Nucleic Acids Res. 2013. PMID: 23729471 Free PMC article.

9

Addressing the Role of Conformational Diversity in Protein Structure Prediction.

Palopoli N, Monzon AM, Parisi G, Fornasari MS. Palopoli N, et al. PLoS One. 2016 May 9;11(5):e0154923. doi: 10.1371/journal.pone.0154923. eCollection 2016. PLoS One. 2016. PMID: 27159429 Free PMC article.

10

Bioinformatics calls the school: Use of smartphones to introduce Python for bioinformatics in high schools.

Velez Rueda AJ, Benítez GI, Marchetti J, Hasenahuer MA, Fornasari MS, Palopoli N, Parisi G. Velez Rueda AJ, et al. Among authors: palopoli n. PLoS Comput Biol. 2019 Feb 14;15(2):e1006473. doi: 10.1371/journal.pcbi.1006473. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30763318 Free PMC article.

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