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Deep generative modeling for single-cell transcriptomics.
Lopez R, Regier J, Cole MB, Jordan MI, Yosef N. Lopez R, et al. Among authors: jordan mi. Nat Methods. 2018 Dec;15(12):1053-1058. doi: 10.1038/s41592-018-0229-2. Epub 2018 Nov 30. Nat Methods. 2018. PMID: 30504886 Free PMC article.
A Python library for probabilistic analysis of single-cell omics data.
Gayoso A, Lopez R, Xing G, Boyeau P, Valiollah Pour Amiri V, Hong J, Wu K, Jayasuriya M, Mehlman E, Langevin M, Liu Y, Samaran J, Misrachi G, Nazaret A, Clivio O, Xu C, Ashuach T, Gabitto M, Lotfollahi M, Svensson V, da Veiga Beltrame E, Kleshchevnikov V, Talavera-López C, Pachter L, Theis FJ, Streets A, Jordan MI, Regier J, Yosef N. Gayoso A, et al. Among authors: jordan mi. Nat Biotechnol. 2022 Feb;40(2):163-166. doi: 10.1038/s41587-021-01206-w. Nat Biotechnol. 2022. PMID: 35132262 No abstract available.
DestVI identifies continuums of cell types in spatial transcriptomics data.
Lopez R, Li B, Keren-Shaul H, Boyeau P, Kedmi M, Pilzer D, Jelinski A, Yofe I, David E, Wagner A, Ergen C, Addadi Y, Golani O, Ronchese F, Jordan MI, Amit I, Yosef N. Lopez R, et al. Among authors: jordan mi. Nat Biotechnol. 2022 Sep;40(9):1360-1369. doi: 10.1038/s41587-022-01272-8. Epub 2022 Apr 21. Nat Biotechnol. 2022. PMID: 35449415 Free PMC article.
MultiVI: deep generative model for the integration of multimodal data.
Ashuach T, Gabitto MI, Koodli RV, Saldi GA, Jordan MI, Yosef N. Ashuach T, et al. Among authors: jordan mi. Nat Methods. 2023 Aug;20(8):1222-1231. doi: 10.1038/s41592-023-01909-9. Epub 2023 Jun 29. Nat Methods. 2023. PMID: 37386189 Free PMC article.
Subtree power analysis and species selection for comparative genomics.
McAuliffe JD, Jordan MI, Pachter L. McAuliffe JD, et al. Among authors: jordan mi. Proc Natl Acad Sci U S A. 2005 May 31;102(22):7900-5. doi: 10.1073/pnas.0502790102. Epub 2005 May 23. Proc Natl Acad Sci U S A. 2005. PMID: 15911755 Free PMC article.
Nonparametric combinatorial sequence models.
Wauthier FL, Jordan MI, Jojic N. Wauthier FL, et al. Among authors: jordan mi. J Comput Biol. 2011 Nov;18(11):1649-60. doi: 10.1089/cmb.2011.0175. Epub 2011 Nov 2. J Comput Biol. 2011. PMID: 22047543
79 results